Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002D01.3 |
| Conread position: | 373-667 |
| Cow position: | chr6:16552366-16552066 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 374-575 |
| Cow position: | chr6:34101798-34101604 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 374-667 |
| Cow position: | chr6:1055999-1055713 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 390-665 |
| Cow position: | chr6:29838518-29838797 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 392-667 |
| Cow position: | chr6:418031-417747 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 159 |
| Conread position: | 409-644 |
| Cow position: | chr6:69054178-69053940 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 423-636 |
| Cow position: | chr6:63011834-63012047 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 423-664 |
| Cow position: | chr6:35751549-35751306 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 152, 143 |
| Conread position: | 426-664 |
| Cow position: | chr6:60414802-60415040 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 428-652 |
| Cow position: | chr6:43603439-43603204 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 428-667 |
| Cow position: | chr6:26638042-26637800 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 431-667 |
| Cow position: | chr6:68590613-68590857 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 432-654 |
| Cow position: | chr6:65706536-65706311 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 432-661 |
| Cow position: | chr6:15264874-15264642 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 142, 71 |
| Conread position: | 432-664 |
| Cow position: | chr6:61410179-61409942 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 150, 135 |
| Conread position: | 432-667 |
| Cow position: | chr6:62582971-62583213 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 129 |
| Conread position: | 433-667 |
| Cow position: | chr6:68263785-68263548 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 433-668 |
| Cow position: | chr6:44758051-44757812 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 435-667 |
| Cow position: | chr6:59218633-59218868 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 122, 14 |
| Conread position: | 444-666 |
| Cow position: | chr6:55972330-55972564 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 451-667 |
| Cow position: | chr6:18414334-18414112 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 451-668 |
| Cow position: | chr6:63028776-63029000 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 452-671 |
| Cow position: | chr6:45660237-45660023 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 458-667 |
| Cow position: | chr6:2592895-2592685 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 467-663 |
| Cow position: | chr6:55503146-55503347 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 471-667 |
| Cow position: | chr6:22817883-22817687 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 170, 120 |
| Conread position: | 475-667 |
| Cow position: | chr6:51396217-51396021 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 98, 62 |
| Conread position: | 476-666 |
| Cow position: | chr6:67981673-67981475 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 130 |
| Conread position: | 487-657 |
| Cow position: | chr6:8957037-8957209 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 503-667 |
| Cow position: | chr6:35187529-35187694 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 504-661 |
| Cow position: | chr6:61130682-61130842 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.