Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1045-1255 |
| Cow position: | chr10:8077292-8077073 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1047-1321 |
| Cow position: | chr10:59153796-59153507 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 249 |
| Conread position: | 1048-1336 |
| Cow position: | chr10:42453988-42454290 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 1056-1335 |
| Cow position: | chr10:6012164-6011882 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 1057-1246 |
| Cow position: | chr10:29359826-29360014 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 1057-1324 |
| Cow position: | chr10:11497106-11497380 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 1059-1331 |
| Cow position: | chr10:69544463-69544177 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 1059-1337 |
| Cow position: | chr10:48255354-48255051 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1059-1350 |
| Cow position: | chr10:9341863-9341550 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 301 |
| Conread position: | 1059-1385 |
| Cow position: | chr10:67020496-67020837 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 169 |
| Conread position: | 1062-1291 |
| Cow position: | chr10:16650038-16649803 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 1069-1328 |
| Cow position: | chr10:45729057-45728780 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1072-1346 |
| Cow position: | chr10:38449413-38449134 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 145 |
| Conread position: | 1075-1247 |
| Cow position: | chr10:25293686-25293867 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1076-1222 |
| Cow position: | chr10:34922961-34923108 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 1111-1349 |
| Cow position: | chr10:24786053-24786292 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 124, 15 |
| Conread position: | 1111-1370 |
| Cow position: | chr10:15391436-15391690 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 150, 17 |
| Conread position: | 1120-1329 |
| Cow position: | chr10:9568665-9568465 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1120-1355 |
| Cow position: | chr10:66791186-66791421 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 1121-1331 |
| Cow position: | chr10:19704559-19704346 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1124-1324 |
| Cow position: | chr10:3115436-3115641 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1126-1265 |
| Cow position: | chr10:31855292-31855435 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 1126-1290 |
| Cow position: | chr10:15874115-15873952 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 134, 29 |
| Conread position: | 1126-1306 |
| Cow position: | chr10:30450104-30449923 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 136, 169 |
| Conread position: | 1126-1318 |
| Cow position: | chr10:58608063-58608255 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 131, 44 |
| Conread position: | 1126-1328 |
| Cow position: | chr10:41984928-41984725 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 125, 199 |
| Conread position: | 1126-1331 |
| Cow position: | chr10:52244688-52244479 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1126-1332 |
| Cow position: | chr10:50324434-50324231 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 131, 24 |
| Conread position: | 1126-1333 |
| Cow position: | chr10:19590804-19590597 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 119 |
| Conread position: | 1126-1336 |
| Cow position: | chr10:8413091-8412883 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 123, 5 |
| Conread position: | 1126-1344 |
| Cow position: | chr10:29689373-29689153 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1126-1354 |
| Cow position: | chr10:49624726-49624957 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1128-1311 |
| Cow position: | chr10:31250772-31250595 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 1128-1324 |
| Cow position: | chr10:45606465-45606275 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 73 |
| Conread position: | 1128-1324 |
| Cow position: | chr10:52070012-52069817 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 1128-1330 |
| Cow position: | chr10:10124305-10124508 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 1128-1333 |
| Cow position: | chr10:6038375-6038176 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 1130-1308 |
| Cow position: | chr10:26620599-26620419 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 1130-1311 |
| Cow position: | chr10:62516845-62517028 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 1130-1314 |
| Cow position: | chr10:56705622-56705437 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 1130-1324 |
| Cow position: | chr10:11316917-11317111 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 1130-1330 |
| Cow position: | chr10:17863548-17863749 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 128 |
| Conread position: | 1130-1331 |
| Cow position: | chr10:65072153-65071952 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 131, 141 |
| Conread position: | 1130-1344 |
| Cow position: | chr10:41771205-41770991 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 1130-1344 |
| Cow position: | chr10:65558731-65558517 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 1130-1344 |
| Cow position: | chr10:68251780-68251992 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 129, 48 |
| Conread position: | 1131-1292 |
| Cow position: | chr10:6490800-6490637 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1131-1324 |
| Cow position: | chr10:11404171-11403981 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 1131-1337 |
| Cow position: | chr10:69225890-69226100 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 123, 54 |
| Conread position: | 1132-1282 |
| Cow position: | chr10:1478468-1478315 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1132-1321 |
| Cow position: | chr10:2407166-2406977 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 148 |
| Conread position: | 1139-1344 |
| Cow position: | chr10:38518656-38518457 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 1140-1324 |
| Cow position: | chr10:1108491-1108304 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1330 |
| Cow position: | chr10:23404175-23404363 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 99 |
| Conread position: | 1141-1324 |
| Cow position: | chr10:48741186-48741005 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 119 |
| Conread position: | 1141-1330 |
| Cow position: | chr10:21447938-21447750 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 119 |
| Conread position: | 1141-1332 |
| Cow position: | chr10:22479748-22479560 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 1142-1330 |
| Cow position: | chr10:30741355-30741539 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 114, 82 |
| Conread position: | 1142-1330 |
| Cow position: | chr10:32560677-32560867 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 1150-1321 |
| Cow position: | chr10:26145427-26145255 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 1153-1309 |
| Cow position: | chr10:58746264-58746107 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 1158-1324 |
| Cow position: | chr10:19601842-19601677 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 70 |
| Conread position: | 1160-1324 |
| Cow position: | chr10:61426742-61426576 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1167-1318 |
| Cow position: | chr10:49586467-49586313 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1167-1339 |
| Cow position: | chr10:52889235-52889064 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 128 |
| Conread position: | 1173-1318 |
| Cow position: | chr10:64364222-64364370 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1182-1321 |
| Cow position: | chr10:25618563-25618698 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1192-1339 |
| Cow position: | chr10:16584200-16584054 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 1211-1346 |
| Cow position: | chr10:8681010-8680874 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 46 |
Show alignments to all cow chromosomes.