Cow genome map

Conread name: Ss1.1-Pig3-SRG8002H01.5

Conread position: 1042-1331
Cow position: chr11:23047889-23047592 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 145

Conread position: 1044-1293
Cow position: chr11:67174581-67174841 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 31, 212

Conread position: 1044-1324
Cow position: chr11:38794411-38794697 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 81, 24

Conread position: 1047-1330
Cow position: chr11:66265462-66265745 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 91

Conread position: 1047-1333
Cow position: chr11:11460354-11460645 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 188

Conread position: 1057-1306
Cow position: chr11:7683839-7684104 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 39, 16

Conread position: 1057-1311
Cow position: chr11:1668550-1668818 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 26, 196

Conread position: 1057-1318
Cow position: chr11:29802697-29802435 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 124

Conread position: 1058-1302
Cow position: chr11:14941714-14941467 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 46

Conread position: 1059-1318
Cow position: chr11:37372185-37372470 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 1059-1326
Cow position: chr11:40486060-40485792 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 24, 15

Conread position: 1059-1330
Cow position: chr11:52832839-52832555 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 61, 252

Conread position: 1059-1331
Cow position: chr11:46705653-46705366 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 110

Conread position: 1059-1331
Cow position: chr11:54244568-54244845 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 24, 32

Conread position: 1059-1343
Cow position: chr11:47193395-47193699 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 24, 144

Conread position: 1065-1321
Cow position: chr11:27681408-27681663 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 194, 11

Conread position: 1065-1360
Cow position: chr11:14308546-14308841 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 266, 11

Conread position: 1066-1364
Cow position: chr11:2394178-2393886 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 15

Conread position: 1068-1330
Cow position: chr11:26468059-26468317 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 185, 8

Conread position: 1069-1329
Cow position: chr11:63157022-63156754 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 6, 187

Conread position: 1069-1342
Cow position: chr11:19269188-19268908 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 113

Conread position: 1076-1332
Cow position: chr11:43646495-43646234 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 17

Conread position: 1078-1354
Cow position: chr11:45889861-45890157 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 75

Conread position: 1081-1323
Cow position: chr11:44655738-44655504 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 148, 43

Conread position: 1093-1308
Cow position: chr11:75255341-75255554 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 34

Conread position: 1108-1311
Cow position: chr11:31422679-31422883 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 143, 20

Conread position: 1111-1310
Cow position: chr11:50951507-50951706 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 17, 9

Conread position: 1120-1328
Cow position: chr11:65988186-65988390 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 62

Conread position: 1121-1321
Cow position: chr11:52402425-52402625 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 139, 5

Conread position: 1121-1327
Cow position: chr11:19259552-19259343 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 89, 5

Conread position: 1126-1318
Cow position: chr11:14046111-14045920 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 95, 54

Conread position: 1126-1321
Cow position: chr11:8828663-8828470 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 133, 53

Conread position: 1126-1321
Cow position: chr11:34946106-34945909 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 0

Conread position: 1126-1322
Cow position: chr11:5648711-5648902 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 136, 44

Conread position: 1126-1324
Cow position: chr11:9055926-9056122 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 123, 99

Conread position: 1126-1329
Cow position: chr11:11752552-11752345 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 77, 0

Conread position: 1126-1329
Cow position: chr11:81518207-81518010 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 123, 53

Conread position: 1126-1331
Cow position: chr11:18144851-18144651 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 85, 14

Conread position: 1126-1332
Cow position: chr11:32438986-32438778 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 127, 117

Conread position: 1126-1338
Cow position: chr11:69402283-69402070 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 135, 102

Conread position: 1126-1360
Cow position: chr11:24625810-24626038 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 135, 14

Conread position: 1128-1331
Cow position: chr11:53452378-53452177 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 126, 49

Conread position: 1129-1321
Cow position: chr11:19501937-19502130 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 128, 76

Conread position: 1130-1321
Cow position: chr11:67871633-67871441 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 81, 19

Conread position: 1130-1324
Cow position: chr11:61427563-61427754 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 123, 81

Conread position: 1130-1328
Cow position: chr11:27722361-27722562 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 0

Conread position: 1130-1344
Cow position: chr11:50937776-50937554 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 85, 17

Conread position: 1130-1355
Cow position: chr11:21136785-21137010 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 121, 40

Conread position: 1130-1357
Cow position: chr11:38845293-38845068 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 96

Conread position: 1130-1370
Cow position: chr11:76392047-76391809 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 14

Conread position: 1131-1321
Cow position: chr11:53445748-53445932 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1131-1331
Cow position: chr11:40275631-40275429 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 128, 0

Conread position: 1131-1331
Cow position: chr11:40279123-40278921 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 128, 0

Conread position: 1131-1344
Cow position: chr11:13306858-13306638 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 1132-1324
Cow position: chr11:84795778-84795587 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 165

Conread position: 1132-1329
Cow position: chr11:41272109-41272308 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 79, 23

Conread position: 1133-1327
Cow position: chr11:20491544-20491732 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 126, 27

Conread position: 1133-1330
Cow position: chr11:58112954-58112758 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 115, 8

Conread position: 1136-1324
Cow position: chr11:7001955-7001764 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 1139-1327
Cow position: chr11:50953585-50953395 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 112, 0

Conread position: 1140-1273
Cow position: chr11:8232470-8232336 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 115

Conread position: 1140-1321
Cow position: chr11:11785311-11785495 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 92, 0

Conread position: 1140-1328
Cow position: chr11:9368807-9368995 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 51

Conread position: 1140-1328
Cow position: chr11:19606297-19606481 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 70, 39

Conread position: 1140-1331
Cow position: chr11:16232958-16232762 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1140-1336
Cow position: chr11:44815485-44815681 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 108, 93

Conread position: 1142-1331
Cow position: chr11:34642248-34642058 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 117, 37

Conread position: 1142-1339
Cow position: chr11:47125530-47125722 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 53

Conread position: 1147-1329
Cow position: chr11:65958714-65958530 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 115, 72

Conread position: 1149-1343
Cow position: chr11:696360-696168 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 164

Conread position: 1150-1315
Cow position: chr11:56821254-56821086 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 1150-1333
Cow position: chr11:44609554-44609736 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 111, 51

Conread position: 1152-1308
Cow position: chr11:77008033-77008185 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 24

Conread position: 1157-1331
Cow position: chr11:6729665-6729839 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 102, 19

Conread position: 1158-1354
Cow position: chr11:29978340-29978140 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 53, 181

Conread position: 1160-1324
Cow position: chr11:40269596-40269433 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 135

Conread position: 1163-1331
Cow position: chr11:40553842-40554009 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 130

Conread position: 1167-1327
Cow position: chr11:373139-372976 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 1167-1331
Cow position: chr11:34136508-34136674 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1168-1331
Cow position: chr11:56796523-56796357 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 1170-1324
Cow position: chr11:32072154-32072308 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 40

Conread position: 1171-1324
Cow position: chr11:49218338-49218182 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 1176-1329
Cow position: chr11:41323251-41323094 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 13, 32

Conread position: 1176-1330
Cow position: chr11:22009372-22009215 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 1182-1330
Cow position: chr11:76856151-76856008 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 1187-1338
Cow position: chr11:76851811-76851658 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 64, 151

Conread position: 1200-1348
Cow position: chr11:33191583-33191435 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 118

Show alignments to all cow chromosomes.