Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1315 |
| Cow position: | chr12:30596310-30596604 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1059-1315 |
| Cow position: | chr12:16543721-16543443 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 24, 261 |
| Conread position: | 1059-1321 |
| Cow position: | chr12:30064803-30065074 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 136 |
| Conread position: | 1065-1324 |
| Cow position: | chr12:42918359-42918608 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 1067-1329 |
| Cow position: | chr12:25312479-25312226 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 183, 7 |
| Conread position: | 1078-1324 |
| Cow position: | chr12:27055506-27055747 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 1111-1323 |
| Cow position: | chr12:24529449-24529243 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 109, 24 |
| Conread position: | 1117-1357 |
| Cow position: | chr12:3816420-3816664 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 78, 210 |
| Conread position: | 1121-1318 |
| Cow position: | chr12:18093834-18094028 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 5 |
| Conread position: | 1121-1320 |
| Cow position: | chr12:47486771-47486974 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1121-1338 |
| Cow position: | chr12:7645863-7645652 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 1126-1275 |
| Cow position: | chr12:31198711-31198863 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1126-1324 |
| Cow position: | chr12:7996358-7996555 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 1126-1333 |
| Cow position: | chr12:24559302-24559511 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 200 |
| Conread position: | 1128-1329 |
| Cow position: | chr12:18966807-18966607 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 1130-1306 |
| Cow position: | chr12:13657795-13657616 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1130-1318 |
| Cow position: | chr12:33458097-33458278 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 1130-1318 |
| Cow position: | chr12:48425663-48425848 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 1130-1321 |
| Cow position: | chr12:5658798-5658605 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 1130-1336 |
| Cow position: | chr12:5497873-5497674 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 131, 47 |
| Conread position: | 1130-1337 |
| Cow position: | chr12:34242376-34242166 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 1130-1338 |
| Cow position: | chr12:9229552-9229339 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 128 |
| Conread position: | 1130-1339 |
| Cow position: | chr12:42477960-42478168 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 1130-1342 |
| Cow position: | chr12:5539018-5538811 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 1130-1344 |
| Cow position: | chr12:29691244-29691033 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 129, 40 |
| Conread position: | 1131-1331 |
| Cow position: | chr12:40931663-40931464 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 82 |
| Conread position: | 1131-1331 |
| Cow position: | chr12:44907966-44908169 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 39 |
| Conread position: | 1132-1319 |
| Cow position: | chr12:29448598-29448783 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 1136-1306 |
| Cow position: | chr12:32413468-32413644 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1136-1338 |
| Cow position: | chr12:25933639-25933841 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 113, 134 |
| Conread position: | 1137-1332 |
| Cow position: | chr12:39781385-39781188 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1140-1308 |
| Cow position: | chr12:4582904-4583070 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 149 |
| Conread position: | 1140-1314 |
| Cow position: | chr12:12331550-12331375 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 1140-1324 |
| Cow position: | chr12:5680641-5680828 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1324 |
| Cow position: | chr12:25606663-25606851 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1143-1321 |
| Cow position: | chr12:43671669-43671842 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 116, 21 |
| Conread position: | 1143-1337 |
| Cow position: | chr12:1223379-1223188 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 118, 35 |
| Conread position: | 1152-1329 |
| Cow position: | chr12:11081129-11080950 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1155-1299 |
| Cow position: | chr12:27038768-27038623 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 1155-1354 |
| Cow position: | chr12:34090105-34090293 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 9 |
| Conread position: | 1156-1324 |
| Cow position: | chr12:11520151-11520317 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 1164-1318 |
| Cow position: | chr12:749343-749496 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 1165-1330 |
| Cow position: | chr12:36109279-36109111 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1172-1330 |
| Cow position: | chr12:15984756-15984600 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 105 |
| Conread position: | 1181-1321 |
| Cow position: | chr12:24681818-24681960 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1206-1331 |
| Cow position: | chr12:38096147-38096275 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.