Cow genome map

Conread name: Ss1.1-Pig3-SRG8002H01.5

Conread position: 863-1324
Cow position: chr13:46291924-46291458 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 362, 0

Conread position: 1047-1311
Cow position: chr13:17346909-17346627 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 260

Conread position: 1054-1315
Cow position: chr13:17886605-17886329 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 133

Conread position: 1057-1321
Cow position: chr13:29820134-29820401 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 64, 0

Conread position: 1058-1321
Cow position: chr13:13446067-13446349 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 197

Conread position: 1058-1348
Cow position: chr13:47502636-47502931 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 15

Conread position: 1059-1289
Cow position: chr13:24280337-24280094 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 1059-1318
Cow position: chr13:33975507-33975241 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1059-1345
Cow position: chr13:12233362-12233670 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 291

Conread position: 1060-1324
Cow position: chr13:1558436-1558711 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 176

Conread position: 1061-1331
Cow position: chr13:32717784-32718069 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 182

Conread position: 1064-1311
Cow position: chr13:16952534-16952284 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 57, 116

Conread position: 1069-1286
Cow position: chr13:26508541-26508324 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 74

Conread position: 1069-1340
Cow position: chr13:18551072-18550792 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 112

Conread position: 1076-1324
Cow position: chr13:22886922-22887187 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 1076-1339
Cow position: chr13:46501374-46501108 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 91, 53

Conread position: 1114-1308
Cow position: chr13:21627870-21628062 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 36, 23

Conread position: 1118-1324
Cow position: chr13:8822873-8822672 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 92, 101

Conread position: 1120-1258
Cow position: chr13:3016166-3016303 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 37

Conread position: 1120-1308
Cow position: chr13:23265741-23265550 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 131, 0

Conread position: 1120-1311
Cow position: chr13:32167307-32167496 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 131, 49

Conread position: 1120-1331
Cow position: chr13:47188446-47188238 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 82

Conread position: 1120-1341
Cow position: chr13:54094820-54094595 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 222

Conread position: 1120-1356
Cow position: chr13:34761684-34761457 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 141, 7

Conread position: 1121-1318
Cow position: chr13:11794447-11794260 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 47, 25

Conread position: 1121-1318
Cow position: chr13:34995320-34995521 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 7

Conread position: 1121-1350
Cow position: chr13:20466279-20466514 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 89, 5

Conread position: 1121-1372
Cow position: chr13:38631571-38631822 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 76, 5

Conread position: 1125-1290
Cow position: chr13:32657383-32657213 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 1125-1331
Cow position: chr13:13578029-13578240 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 1125-1331
Cow position: chr13:52251797-52252004 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 64

Conread position: 1126-1315
Cow position: chr13:32904781-32904591 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 133, 148

Conread position: 1126-1321
Cow position: chr13:15945484-15945281 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 56

Conread position: 1126-1324
Cow position: chr13:15090908-15091105 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 122, 77

Conread position: 1126-1328
Cow position: chr13:31852765-31852566 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 123, 94

Conread position: 1126-1331
Cow position: chr13:12324184-12323980 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 26, 68

Conread position: 1126-1332
Cow position: chr13:9665062-9664859 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 83, 116

Conread position: 1126-1333
Cow position: chr13:17796370-17796162 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 82, 111

Conread position: 1126-1334
Cow position: chr13:43167030-43167240 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 133, 46

Conread position: 1126-1338
Cow position: chr13:33282007-33281795 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 131, 38

Conread position: 1127-1340
Cow position: chr13:12745673-12745457 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 57, 46

Conread position: 1128-1308
Cow position: chr13:58348079-58347904 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 133, 13

Conread position: 1128-1331
Cow position: chr13:33160995-33161199 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 121, 72

Conread position: 1130-1251
Cow position: chr13:18350830-18350713 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 56, 0

Conread position: 1130-1308
Cow position: chr13:52748800-52748976 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 118, 45

Conread position: 1130-1309
Cow position: chr13:52569004-52569186 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 81, 0

Conread position: 1130-1315
Cow position: chr13:18761736-18761917 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 126, 49

Conread position: 1130-1318
Cow position: chr13:25435124-25435315 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 1130-1331
Cow position: chr13:6621593-6621795 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 90, 70

Conread position: 1130-1331
Cow position: chr13:9803062-9802865 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 119, 49

Conread position: 1130-1331
Cow position: chr13:11768045-11768249 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 1131-1340
Cow position: chr13:8245335-8245544 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 27

Conread position: 1132-1306
Cow position: chr13:46430312-46430484 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 117, 43

Conread position: 1132-1308
Cow position: chr13:49847919-49847745 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 165, 128

Conread position: 1136-1344
Cow position: chr13:49200626-49200417 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 69, 35

Conread position: 1140-1306
Cow position: chr13:58620959-58621124 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 111, 86

Conread position: 1140-1311
Cow position: chr13:14717351-14717523 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 1140-1318
Cow position: chr13:10932539-10932364 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 108, 0

Conread position: 1140-1331
Cow position: chr13:1958996-1958806 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 113, 178

Conread position: 1140-1331
Cow position: chr13:17991643-17991454 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 116, 39

Conread position: 1140-1331
Cow position: chr13:20156470-20156282 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 17

Conread position: 1140-1342
Cow position: chr13:22075658-22075457 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 119, 41

Conread position: 1140-1345
Cow position: chr13:40464215-40464012 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 39

Conread position: 1154-1338
Cow position: chr13:50823840-50824028 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 7

Conread position: 1158-1332
Cow position: chr13:49457655-49457481 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 167

Conread position: 1161-1344
Cow position: chr13:57341327-57341509 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 100, 9

Conread position: 1164-1338
Cow position: chr13:58762636-58762812 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 0

Conread position: 1165-1307
Cow position: chr13:25207078-25206933 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1166-1308
Cow position: chr13:54564674-54564819 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1167-1293
Cow position: chr13:21403448-21403575 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 31

Conread position: 1172-1330
Cow position: chr13:18665696-18665535 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 1181-1329
Cow position: chr13:56270289-56270442 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1181-1329
Cow position: chr13:56281183-56281030 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 1184-1295
Cow position: chr13:24238879-24238992 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 1187-1337
Cow position: chr13:23047867-23048020 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.