Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1258 |
| Cow position: | chr14:31399733-31399523 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 1048-1317 |
| Cow position: | chr14:45849060-45849350 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1048-1332 |
| Cow position: | chr14:43565744-43566026 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 1057-1315 |
| Cow position: | chr14:7647880-7648151 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 1057-1330 |
| Cow position: | chr14:28565609-28565330 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 1059-1266 |
| Cow position: | chr14:28326989-28327205 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 1059-1359 |
| Cow position: | chr14:13810085-13809758 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1062-1321 |
| Cow position: | chr14:29861013-29860740 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1062-1329 |
| Cow position: | chr14:26960293-26960557 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 117 |
| Conread position: | 1064-1324 |
| Cow position: | chr14:10906858-10906590 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1081-1324 |
| Cow position: | chr14:23050508-23050752 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 1081-1334 |
| Cow position: | chr14:25385782-25386036 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 1082-1324 |
| Cow position: | chr14:47519648-47519892 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 1116-1330 |
| Cow position: | chr14:47693764-47693552 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 144, 62 |
| Conread position: | 1120-1291 |
| Cow position: | chr14:47604234-47604407 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1120-1331 |
| Cow position: | chr14:21691211-21691423 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 6 |
| Conread position: | 1125-1321 |
| Cow position: | chr14:35700484-35700291 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 132, 13 |
| Conread position: | 1125-1324 |
| Cow position: | chr14:18979139-18979333 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 1125-1332 |
| Cow position: | chr14:6441969-6441759 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1126-1266 |
| Cow position: | chr14:20435451-20435309 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1126-1308 |
| Cow position: | chr14:12559421-12559601 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 1126-1321 |
| Cow position: | chr14:6789442-6789248 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 1126-1324 |
| Cow position: | chr14:26493933-26493732 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 1126-1324 |
| Cow position: | chr14:44861177-44861372 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 131, 99 |
| Conread position: | 1126-1328 |
| Cow position: | chr14:19022839-19023041 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 125, 144 |
| Conread position: | 1126-1332 |
| Cow position: | chr14:26108692-26108485 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 123, 146 |
| Conread position: | 1126-1343 |
| Cow position: | chr14:23107383-23107157 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 82, 182 |
| Conread position: | 1126-1351 |
| Cow position: | chr14:37678944-37679168 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 125, 140 |
| Conread position: | 1126-1359 |
| Cow position: | chr14:10692209-10692434 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 221, 126 |
| Conread position: | 1127-1321 |
| Cow position: | chr14:28605291-28605095 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1130-1306 |
| Cow position: | chr14:20045606-20045429 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 122, 147 |
| Conread position: | 1132-1324 |
| Cow position: | chr14:27060505-27060323 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1139-1287 |
| Cow position: | chr14:21084387-21084237 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1139-1332 |
| Cow position: | chr14:41531618-41531811 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 1140-1323 |
| Cow position: | chr14:21369409-21369229 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 39 |
| Conread position: | 1140-1327 |
| Cow position: | chr14:43031842-43031653 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1140-1329 |
| Cow position: | chr14:20701774-20701961 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 1141-1326 |
| Cow position: | chr14:48213125-48212941 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 1142-1324 |
| Cow position: | chr14:44032079-44031894 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1142-1330 |
| Cow position: | chr14:26153226-26153415 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 1143-1321 |
| Cow position: | chr14:26805012-26805189 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 1144-1329 |
| Cow position: | chr14:37624732-37624914 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 1144-1331 |
| Cow position: | chr14:9065934-9065745 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1144-1332 |
| Cow position: | chr14:36080877-36081062 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 1149-1331 |
| Cow position: | chr14:20795809-20795630 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 139 |
| Conread position: | 1151-1324 |
| Cow position: | chr14:38355224-38355049 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 124 |
| Conread position: | 1160-1356 |
| Cow position: | chr14:28565325-28565131 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 9, 76 |
| Conread position: | 1169-1310 |
| Cow position: | chr14:20284171-20284027 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1171-1366 |
| Cow position: | chr14:11582074-11581887 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 1172-1291 |
| Cow position: | chr14:8875035-8875156 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1190-1358 |
| Cow position: | chr14:43314978-43314812 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 1202-1328 |
| Cow position: | chr14:38688250-38688377 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1205-1324 |
| Cow position: | chr14:7614042-7613922 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1205-1338 |
| Cow position: | chr14:46751367-46751236 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.