Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1056-1333 |
| Cow position: | chr15:35967291-35967588 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 1057-1311 |
| Cow position: | chr15:27247699-27247425 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 117 |
| Conread position: | 1058-1351 |
| Cow position: | chr15:34255547-34255837 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 127 |
| Conread position: | 1059-1328 |
| Cow position: | chr15:22886745-22886460 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1059-1330 |
| Cow position: | chr15:24411610-24411320 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 138 |
| Conread position: | 1059-1355 |
| Cow position: | chr15:23109111-23109408 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 188, 69 |
| Conread position: | 1060-1324 |
| Cow position: | chr15:44297245-44296996 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1065-1327 |
| Cow position: | chr15:19725551-19725806 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 1071-1308 |
| Cow position: | chr15:17213634-17213384 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 1075-1240 |
| Cow position: | chr15:49200591-49200754 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 44 |
| Conread position: | 1076-1324 |
| Cow position: | chr15:44879779-44879512 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1120-1331 |
| Cow position: | chr15:449942-450151 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1121-1324 |
| Cow position: | chr15:40498183-40498396 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 130, 5 |
| Conread position: | 1121-1350 |
| Cow position: | chr15:44252471-44252248 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 138, 7 |
| Conread position: | 1125-1344 |
| Cow position: | chr15:20370620-20370837 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 132, 103 |
| Conread position: | 1126-1286 |
| Cow position: | chr15:26421495-26421655 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 1126-1305 |
| Cow position: | chr15:40117343-40117525 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 131, 70 |
| Conread position: | 1126-1318 |
| Cow position: | chr15:24864164-24864351 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 1126-1324 |
| Cow position: | chr15:14758148-14758343 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 109, 24 |
| Conread position: | 1126-1324 |
| Cow position: | chr15:24285086-24284891 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 123, 36 |
| Conread position: | 1126-1340 |
| Cow position: | chr15:20778123-20777908 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 189 |
| Conread position: | 1127-1308 |
| Cow position: | chr15:10303327-10303144 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1127-1318 |
| Cow position: | chr15:15215122-15214929 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1127-1320 |
| Cow position: | chr15:31616901-31617096 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1127-1330 |
| Cow position: | chr15:31545243-31545448 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1128-1273 |
| Cow position: | chr15:11957644-11957497 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 1130-1275 |
| Cow position: | chr15:38322936-38322790 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 1130-1303 |
| Cow position: | chr15:35283365-35283538 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 159 |
| Conread position: | 1130-1314 |
| Cow position: | chr15:9970876-9971062 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 34 |
| Conread position: | 1130-1324 |
| Cow position: | chr15:34037088-34037281 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 1130-1331 |
| Cow position: | chr15:20482745-20482947 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 1130-1334 |
| Cow position: | chr15:3572601-3572802 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 1130-1337 |
| Cow position: | chr15:42195165-42195369 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 96 |
| Conread position: | 1132-1314 |
| Cow position: | chr15:26933849-26934033 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1132-1331 |
| Cow position: | chr15:6749749-6749945 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 119, 37 |
| Conread position: | 1136-1318 |
| Cow position: | chr15:39894685-39894510 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 69 |
| Conread position: | 1136-1332 |
| Cow position: | chr15:8022146-8021954 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 126, 43 |
| Conread position: | 1139-1344 |
| Cow position: | chr15:12170337-12170130 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 1140-1318 |
| Cow position: | chr15:37918738-37918558 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1140-1321 |
| Cow position: | chr15:50177202-50177018 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1331 |
| Cow position: | chr15:24977086-24977273 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 41 |
| Conread position: | 1140-1345 |
| Cow position: | chr15:12163429-12163634 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 120, 52 |
| Conread position: | 1140-1349 |
| Cow position: | chr15:3571871-3571669 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 112, 153 |
| Conread position: | 1141-1266 |
| Cow position: | chr15:17911234-17911106 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1141-1331 |
| Cow position: | chr15:23547902-23548088 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 31 |
| Conread position: | 1141-1336 |
| Cow position: | chr15:17788197-17788007 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 1141-1338 |
| Cow position: | chr15:43612173-43611975 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 1142-1324 |
| Cow position: | chr15:7980275-7980096 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 48 |
| Conread position: | 1150-1329 |
| Cow position: | chr15:31483452-31483270 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1151-1344 |
| Cow position: | chr15:33625039-33624839 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 191 |
| Conread position: | 1155-1306 |
| Cow position: | chr15:7059328-7059480 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 1164-1315 |
| Cow position: | chr15:2201373-2201221 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 56 |
| Conread position: | 1167-1344 |
| Cow position: | chr15:20402480-20402657 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 1172-1329 |
| Cow position: | chr15:14323356-14323511 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 116 |
| Conread position: | 1176-1332 |
| Cow position: | chr15:2117940-2117783 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1176-1369 |
| Cow position: | chr15:33680750-33680559 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 159 |
| Conread position: | 1207-1337 |
| Cow position: | chr15:52389618-52389487 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 115 |
Show alignments to all cow chromosomes.