Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 950-1293 |
| Cow position: | chr16:23978621-23978281 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 155, 144 |
| Conread position: | 1047-1258 |
| Cow position: | chr16:51880105-51879888 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 1053-1324 |
| Cow position: | chr16:16056161-16055878 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 230 |
| Conread position: | 1057-1314 |
| Cow position: | chr16:52565342-52565592 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 1057-1331 |
| Cow position: | chr16:15805876-15806143 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 1059-1318 |
| Cow position: | chr16:23990589-23990334 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 1059-1320 |
| Cow position: | chr16:8704175-8704435 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 120 |
| Conread position: | 1059-1321 |
| Cow position: | chr16:20260386-20260652 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 1059-1332 |
| Cow position: | chr16:46680725-46681004 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 1068-1318 |
| Cow position: | chr16:51069988-51069738 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 8 |
| Conread position: | 1076-1318 |
| Cow position: | chr16:2619051-2618810 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 1079-1333 |
| Cow position: | chr16:51652589-51652860 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1093-1330 |
| Cow position: | chr16:33121545-33121793 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 1099-1290 |
| Cow position: | chr16:23163618-23163426 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 155, 29 |
| Conread position: | 1115-1318 |
| Cow position: | chr16:3566137-3566339 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 1120-1295 |
| Cow position: | chr16:5511786-5511961 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 131, 6 |
| Conread position: | 1125-1308 |
| Cow position: | chr16:28827196-28827010 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1125-1330 |
| Cow position: | chr16:44353-44551 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 1126-1290 |
| Cow position: | chr16:37719141-37719308 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 1126-1308 |
| Cow position: | chr16:36930332-36930151 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1126-1308 |
| Cow position: | chr16:41711659-41711840 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 123, 77 |
| Conread position: | 1126-1321 |
| Cow position: | chr16:19003104-19002911 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 132, 53 |
| Conread position: | 1126-1330 |
| Cow position: | chr16:23066646-23066843 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 1126-1331 |
| Cow position: | chr16:53267709-53267913 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 131, 102 |
| Conread position: | 1126-1332 |
| Cow position: | chr16:45693132-45693335 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 1128-1311 |
| Cow position: | chr16:49320950-49321125 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 1129-1299 |
| Cow position: | chr16:44723043-44722877 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 46 |
| Conread position: | 1130-1248 |
| Cow position: | chr16:4979789-4979908 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1130-1265 |
| Cow position: | chr16:42257439-42257570 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1130-1310 |
| Cow position: | chr16:39156452-39156265 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 1130-1314 |
| Cow position: | chr16:689691-689876 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 1130-1318 |
| Cow position: | chr16:18557277-18557086 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1130-1321 |
| Cow position: | chr16:44581085-44580896 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 163 |
| Conread position: | 1130-1326 |
| Cow position: | chr16:48493167-48493367 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1130-1328 |
| Cow position: | chr16:18427175-18427369 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 35 |
| Conread position: | 1130-1333 |
| Cow position: | chr16:47909356-47909150 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1130-1335 |
| Cow position: | chr16:31419434-31419641 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1130-1336 |
| Cow position: | chr16:52577445-52577653 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1131-1320 |
| Cow position: | chr16:30639325-30639504 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 1131-1340 |
| Cow position: | chr16:8315205-8314993 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 1132-1315 |
| Cow position: | chr16:42312375-42312558 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 72 |
| Conread position: | 1133-1315 |
| Cow position: | chr16:54515713-54515893 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 128, 42 |
| Conread position: | 1140-1311 |
| Cow position: | chr16:27013893-27014071 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 141 |
| Conread position: | 1140-1312 |
| Cow position: | chr16:11085384-11085212 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 1140-1329 |
| Cow position: | chr16:13660235-13660046 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 1141-1301 |
| Cow position: | chr16:44693185-44693024 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 1143-1308 |
| Cow position: | chr16:5580314-5580482 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1143-1329 |
| Cow position: | chr16:22808558-22808368 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 185 |
| Conread position: | 1144-1315 |
| Cow position: | chr16:50114187-50114362 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1150-1331 |
| Cow position: | chr16:10611615-10611443 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1151-1356 |
| Cow position: | chr16:56282955-56283155 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 97, 64 |
| Conread position: | 1163-1329 |
| Cow position: | chr16:15808998-15809166 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1164-1314 |
| Cow position: | chr16:11777184-11777025 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1171-1318 |
| Cow position: | chr16:20664318-20664465 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 1176-1324 |
| Cow position: | chr16:10406548-10406396 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1177-1331 |
| Cow position: | chr16:55070489-55070329 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1183-1330 |
| Cow position: | chr16:11772209-11772060 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1185-1331 |
| Cow position: | chr16:13027225-13027077 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1196-1318 |
| Cow position: | chr16:10331673-10331797 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.