Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1001-1305 |
| Cow position: | chr17:39012604-39012922 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 1038-1331 |
| Cow position: | chr17:20234145-20234445 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1044-1321 |
| Cow position: | chr17:40854790-40855076 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 1052-1351 |
| Cow position: | chr17:1604632-1604326 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 1059-1301 |
| Cow position: | chr17:7595101-7595351 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 1059-1322 |
| Cow position: | chr17:5380905-5381172 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 1059-1324 |
| Cow position: | chr17:728400-728138 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 1068-1321 |
| Cow position: | chr17:13716067-13715815 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 181, 12 |
| Conread position: | 1069-1324 |
| Cow position: | chr17:27819246-27819515 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 242 |
| Conread position: | 1076-1308 |
| Cow position: | chr17:35212319-35212563 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 170 |
| Conread position: | 1076-1328 |
| Cow position: | chr17:15634917-15634659 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 219 |
| Conread position: | 1078-1344 |
| Cow position: | chr17:30236164-30236434 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 1081-1331 |
| Cow position: | chr17:3620112-3619857 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 162 |
| Conread position: | 1087-1331 |
| Cow position: | chr17:34870062-34870313 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1097-1335 |
| Cow position: | chr17:8832151-8831906 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 88 |
| Conread position: | 1111-1321 |
| Cow position: | chr17:24880753-24880960 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 1120-1324 |
| Cow position: | chr17:38139527-38139731 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 139, 7 |
| Conread position: | 1120-1331 |
| Cow position: | chr17:31465234-31465011 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 117 |
| Conread position: | 1120-1331 |
| Cow position: | chr17:35387984-35387771 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 178 |
| Conread position: | 1125-1292 |
| Cow position: | chr17:20652888-20652719 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1126-1318 |
| Cow position: | chr17:36173949-36173750 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 1126-1330 |
| Cow position: | chr17:14278087-14278291 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 1126-1331 |
| Cow position: | chr17:10314444-10314652 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1126-1335 |
| Cow position: | chr17:7614356-7614141 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 86 |
| Conread position: | 1126-1336 |
| Cow position: | chr17:26162398-26162193 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 94, 18 |
| Conread position: | 1127-1330 |
| Cow position: | chr17:11655400-11655606 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 200 |
| Conread position: | 1128-1328 |
| Cow position: | chr17:32457540-32457344 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 1128-1329 |
| Cow position: | chr17:31798422-31798222 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 1130-1318 |
| Cow position: | chr17:8279678-8279498 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 1130-1324 |
| Cow position: | chr17:2271027-2271219 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 131, 164 |
| Conread position: | 1130-1327 |
| Cow position: | chr17:10220879-10221075 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 122, 11 |
| Conread position: | 1130-1327 |
| Cow position: | chr17:13229406-13229603 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 1130-1350 |
| Cow position: | chr17:144148-143931 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 1131-1286 |
| Cow position: | chr17:21373706-21373859 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 120, 45 |
| Conread position: | 1131-1331 |
| Cow position: | chr17:36818069-36818266 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 122, 9 |
| Conread position: | 1134-1306 |
| Cow position: | chr17:3706605-3706433 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 134 |
| Conread position: | 1134-1307 |
| Cow position: | chr17:11826427-11826251 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1134-1321 |
| Cow position: | chr17:39016130-39016317 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 157 |
| Conread position: | 1137-1311 |
| Cow position: | chr17:1328630-1328807 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 150 |
| Conread position: | 1139-1349 |
| Cow position: | chr17:19239843-19239628 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1140-1310 |
| Cow position: | chr17:33913538-33913365 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 1140-1318 |
| Cow position: | chr17:23147456-23147635 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 1140-1324 |
| Cow position: | chr17:12342444-12342260 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 118 |
| Conread position: | 1140-1330 |
| Cow position: | chr17:19891661-19891850 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 153 |
| Conread position: | 1140-1330 |
| Cow position: | chr17:36400139-36400327 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 145 |
| Conread position: | 1140-1332 |
| Cow position: | chr17:10769474-10769277 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1141-1339 |
| Cow position: | chr17:27505135-27505334 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 106, 47 |
| Conread position: | 1144-1329 |
| Cow position: | chr17:6996322-6996506 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 1147-1331 |
| Cow position: | chr17:8215236-8215418 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 151 |
| Conread position: | 1150-1332 |
| Cow position: | chr17:43284693-43284875 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 102, 119 |
| Conread position: | 1151-1319 |
| Cow position: | chr17:18829520-18829695 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1155-1306 |
| Cow position: | chr17:5041354-5041201 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 1155-1362 |
| Cow position: | chr17:7163843-7163633 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 192 |
Show alignments to all cow chromosomes.