Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1046-1330 |
| Cow position: | chr18:39503834-39503544 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 75, 52 |
| Conread position: | 1053-1331 |
| Cow position: | chr18:329423-329137 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 1053-1350 |
| Cow position: | chr18:29949628-29949920 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 1058-1319 |
| Cow position: | chr18:4578608-4578343 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 1059-1275 |
| Cow position: | chr18:25003019-25002789 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 173 |
| Conread position: | 1059-1306 |
| Cow position: | chr18:45961404-45961141 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 1059-1318 |
| Cow position: | chr18:51537799-51537544 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 62, 88 |
| Conread position: | 1059-1338 |
| Cow position: | chr18:24364185-24363899 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 1060-1323 |
| Cow position: | chr18:21706317-21706036 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 1070-1315 |
| Cow position: | chr18:248941-248674 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1076-1324 |
| Cow position: | chr18:44493589-44493336 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 1093-1318 |
| Cow position: | chr18:28794764-28794979 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 166, 28 |
| Conread position: | 1093-1324 |
| Cow position: | chr18:16448452-16448688 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 44, 204 |
| Conread position: | 1114-1297 |
| Cow position: | chr18:16298044-16298228 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 135, 12 |
| Conread position: | 1120-1314 |
| Cow position: | chr18:32908993-32909187 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 106 |
| Conread position: | 1120-1321 |
| Cow position: | chr18:50700630-50700831 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 1120-1324 |
| Cow position: | chr18:51271810-51271595 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1120-1331 |
| Cow position: | chr18:55697076-55696869 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 1124-1324 |
| Cow position: | chr18:7409351-7409154 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 54 |
| Conread position: | 1126-1284 |
| Cow position: | chr18:32773828-32773988 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 99 |
| Conread position: | 1126-1306 |
| Cow position: | chr18:16726600-16726780 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 1126-1318 |
| Cow position: | chr18:6157867-6158052 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 1126-1318 |
| Cow position: | chr18:40893226-40893417 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 1126-1319 |
| Cow position: | chr18:33843136-33842940 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1126-1324 |
| Cow position: | chr18:42061026-42061224 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 133, 94 |
| Conread position: | 1126-1330 |
| Cow position: | chr18:40202855-40202656 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 1126-1331 |
| Cow position: | chr18:26372870-26373078 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1126-1331 |
| Cow position: | chr18:38126498-38126294 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 133, 106 |
| Conread position: | 1126-1348 |
| Cow position: | chr18:25970682-25970471 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 1127-1291 |
| Cow position: | chr18:15689237-15689403 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 1127-1314 |
| Cow position: | chr18:51298433-51298619 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 127, 50 |
| Conread position: | 1130-1283 |
| Cow position: | chr18:16134359-16134205 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 1130-1334 |
| Cow position: | chr18:1190764-1190564 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 11 |
| Conread position: | 1130-1334 |
| Cow position: | chr18:10101446-10101645 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 1131-1311 |
| Cow position: | chr18:16842104-16841915 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1132-1332 |
| Cow position: | chr18:35767129-35767325 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 1134-1250 |
| Cow position: | chr18:213579-213463 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1134-1302 |
| Cow position: | chr18:34021346-34021510 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 85 |
| Conread position: | 1138-1324 |
| Cow position: | chr18:51587582-51587398 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1140-1334 |
| Cow position: | chr18:15831629-15831443 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 1140-1337 |
| Cow position: | chr18:22411648-22411449 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1339 |
| Cow position: | chr18:10687633-10687433 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 158 |
| Conread position: | 1140-1341 |
| Cow position: | chr18:20127142-20126943 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 156 |
| Conread position: | 1143-1293 |
| Cow position: | chr18:48458641-48458793 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1147-1310 |
| Cow position: | chr18:43113974-43113814 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 1147-1331 |
| Cow position: | chr18:48036789-48036975 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1150-1331 |
| Cow position: | chr18:48717964-48717790 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 100 |
| Conread position: | 1150-1337 |
| Cow position: | chr18:28297889-28297699 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 1191-1329 |
| Cow position: | chr18:23652400-23652261 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 1209-1314 |
| Cow position: | chr18:15267957-15267850 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.