Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1044-1344 |
| Cow position: | chr19:36380113-36380415 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 1048-1318 |
| Cow position: | chr19:25271544-25271253 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1058-1317 |
| Cow position: | chr19:32214680-32214961 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 25, 191 |
| Conread position: | 1060-1308 |
| Cow position: | chr19:32989514-32989270 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 194, 71 |
| Conread position: | 1076-1265 |
| Cow position: | chr19:9100067-9100260 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 1093-1314 |
| Cow position: | chr19:9092881-9092650 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 151 |
| Conread position: | 1108-1331 |
| Cow position: | chr19:31381051-31380828 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 1111-1324 |
| Cow position: | chr19:36976953-36976740 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 141, 15 |
| Conread position: | 1119-1324 |
| Cow position: | chr19:30935805-30935598 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 140, 9 |
| Conread position: | 1124-1307 |
| Cow position: | chr19:53738309-53738488 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 7 |
| Conread position: | 1124-1315 |
| Cow position: | chr19:1713171-1712978 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 1124-1330 |
| Cow position: | chr19:11876728-11876527 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 1126-1288 |
| Cow position: | chr19:3080433-3080603 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1126-1308 |
| Cow position: | chr19:36461557-36461373 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 181 |
| Conread position: | 1126-1331 |
| Cow position: | chr19:5648693-5648493 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 1126-1338 |
| Cow position: | chr19:38871039-38871253 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 203 |
| Conread position: | 1126-1354 |
| Cow position: | chr19:28842388-28842153 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1127-1247 |
| Cow position: | chr19:10207583-10207702 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1127-1318 |
| Cow position: | chr19:20292120-20291927 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1128-1321 |
| Cow position: | chr19:7029893-7030086 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 123, 142 |
| Conread position: | 1128-1334 |
| Cow position: | chr19:9387609-9387816 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 1130-1289 |
| Cow position: | chr19:6735252-6735089 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1130-1291 |
| Cow position: | chr19:39250243-39250400 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 1130-1318 |
| Cow position: | chr19:15936813-15936996 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 1130-1320 |
| Cow position: | chr19:952670-952856 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 1130-1330 |
| Cow position: | chr19:26003640-26003436 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1130-1331 |
| Cow position: | chr19:31126773-31126976 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1130-1331 |
| Cow position: | chr19:40026954-40026756 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 55 |
| Conread position: | 1131-1360 |
| Cow position: | chr19:31614087-31614317 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 120, 48 |
| Conread position: | 1132-1283 |
| Cow position: | chr19:35064217-35064060 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1132-1324 |
| Cow position: | chr19:2280662-2280475 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 47 |
| Conread position: | 1135-1318 |
| Cow position: | chr19:31984668-31984484 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 168 |
| Conread position: | 1140-1315 |
| Cow position: | chr19:4824995-4824819 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 1140-1325 |
| Cow position: | chr19:21285092-21284908 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 1140-1325 |
| Cow position: | chr19:35344912-35345101 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1140-1331 |
| Cow position: | chr19:10971112-10970911 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1141-1330 |
| Cow position: | chr19:22932562-22932372 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 110, 184 |
| Conread position: | 1143-1324 |
| Cow position: | chr19:46497926-46498100 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1144-1324 |
| Cow position: | chr19:47783776-47783591 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1147-1329 |
| Cow position: | chr19:12040610-12040794 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 179 |
| Conread position: | 1151-1305 |
| Cow position: | chr19:5986231-5986388 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1155-1318 |
| Cow position: | chr19:1153206-1153372 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1158-1319 |
| Cow position: | chr19:46306334-46306179 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 121 |
| Conread position: | 1163-1324 |
| Cow position: | chr19:11759221-11759057 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1165-1344 |
| Cow position: | chr19:54817524-54817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 161 |
| Conread position: | 1167-1318 |
| Cow position: | chr19:56008711-56008565 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 1176-1329 |
| Cow position: | chr19:39223088-39222934 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1183-1330 |
| Cow position: | chr19:41459224-41459374 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.