Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1048-1319 |
| Cow position: | chr2:50400308-50400588 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 243 |
| Conread position: | 1057-1330 |
| Cow position: | chr2:83745139-83744867 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 1057-1331 |
| Cow position: | chr2:15769599-15769311 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 1058-1266 |
| Cow position: | chr2:70306052-70306268 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1059-1331 |
| Cow position: | chr2:41057617-41057330 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 1059-1345 |
| Cow position: | chr2:42925202-42925497 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 1063-1308 |
| Cow position: | chr2:36998057-36998302 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 28, 74 |
| Conread position: | 1065-1330 |
| Cow position: | chr2:4010022-4010289 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 1065-1331 |
| Cow position: | chr2:70663942-70664209 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 145, 11 |
| Conread position: | 1068-1321 |
| Cow position: | chr2:4070850-4071101 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 8 |
| Conread position: | 1068-1342 |
| Cow position: | chr2:42309623-42309349 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 191, 8 |
| Conread position: | 1069-1330 |
| Cow position: | chr2:8245444-8245708 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 1076-1333 |
| Cow position: | chr2:31113761-31114024 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 45, 173 |
| Conread position: | 1098-1324 |
| Cow position: | chr2:48748771-48748547 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 112, 198 |
| Conread position: | 1118-1314 |
| Cow position: | chr2:68982035-68981836 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1120-1307 |
| Cow position: | chr2:18061652-18061464 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 1121-1314 |
| Cow position: | chr2:64197012-64196821 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 1126-1292 |
| Cow position: | chr2:21955121-21955286 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 125, 55 |
| Conread position: | 1126-1300 |
| Cow position: | chr2:29382695-29382519 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 1126-1312 |
| Cow position: | chr2:425798-425985 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1126-1318 |
| Cow position: | chr2:26042257-26042062 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 113 |
| Conread position: | 1126-1321 |
| Cow position: | chr2:20250694-20250887 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 93 |
| Conread position: | 1126-1321 |
| Cow position: | chr2:20868290-20868104 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1126-1324 |
| Cow position: | chr2:46783499-46783699 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1126-1326 |
| Cow position: | chr2:41313878-41314073 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 1126-1330 |
| Cow position: | chr2:31155695-31155897 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 125, 49 |
| Conread position: | 1126-1330 |
| Cow position: | chr2:62384700-62384492 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1126-1346 |
| Cow position: | chr2:33659719-33659497 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 193 |
| Conread position: | 1126-1349 |
| Cow position: | chr2:50591761-50591988 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 82, 203 |
| Conread position: | 1127-1308 |
| Cow position: | chr2:22859655-22859465 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1127-1321 |
| Cow position: | chr2:72902302-72902108 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 1130-1313 |
| Cow position: | chr2:2937554-2937730 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 119, 30 |
| Conread position: | 1130-1329 |
| Cow position: | chr2:72583912-72584109 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 1130-1331 |
| Cow position: | chr2:793634-793842 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 129, 83 |
| Conread position: | 1130-1331 |
| Cow position: | chr2:13466024-13466216 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 1130-1332 |
| Cow position: | chr2:58685373-58685572 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 1130-1334 |
| Cow position: | chr2:7498566-7498768 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1131-1331 |
| Cow position: | chr2:77982155-77981967 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 38 |
| Conread position: | 1131-1337 |
| Cow position: | chr2:7720920-7720716 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 1132-1323 |
| Cow position: | chr2:39855781-39855965 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 119, 78 |
| Conread position: | 1133-1321 |
| Cow position: | chr2:49480599-49480411 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 1134-1336 |
| Cow position: | chr2:77033674-77033873 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 158 |
| Conread position: | 1136-1324 |
| Cow position: | chr2:17427164-17427354 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1139-1315 |
| Cow position: | chr2:38118002-38117831 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 66 |
| Conread position: | 1140-1245 |
| Cow position: | chr2:39802313-39802208 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1140-1291 |
| Cow position: | chr2:17341884-17342034 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 1140-1308 |
| Cow position: | chr2:14099650-14099816 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 109, 39 |
| Conread position: | 1140-1324 |
| Cow position: | chr2:42774279-42774459 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 1140-1329 |
| Cow position: | chr2:72758628-72758814 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 1140-1332 |
| Cow position: | chr2:33596660-33596460 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1140-1335 |
| Cow position: | chr2:51027954-51028148 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 1141-1311 |
| Cow position: | chr2:36866778-36866616 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1141-1330 |
| Cow position: | chr2:82054845-82054654 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 1142-1322 |
| Cow position: | chr2:4383898-4383718 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 176 |
| Conread position: | 1142-1333 |
| Cow position: | chr2:83854728-83854916 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 81, 100 |
| Conread position: | 1151-1344 |
| Cow position: | chr2:38913682-38913874 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 111, 9 |
| Conread position: | 1152-1308 |
| Cow position: | chr2:64226487-64226644 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 1158-1304 |
| Cow position: | chr2:62464166-62464022 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1164-1306 |
| Cow position: | chr2:51041594-51041449 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1164-1317 |
| Cow position: | chr2:68975870-68976021 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 98, 19 |
| Conread position: | 1181-1358 |
| Cow position: | chr2:58359542-58359713 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1183-1330 |
| Cow position: | chr2:46228210-46228060 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 1201-1330 |
| Cow position: | chr2:17566849-17566719 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 71 |
Show alignments to all cow chromosomes.