Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1315 |
| Cow position: | chr20:220545-220825 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 1057-1311 |
| Cow position: | chr20:13494474-13494719 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 1058-1291 |
| Cow position: | chr20:21236612-21236845 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 214 |
| Conread position: | 1059-1322 |
| Cow position: | chr20:38858475-38858212 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 1059-1344 |
| Cow position: | chr20:23163939-23163660 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 1082-1343 |
| Cow position: | chr20:41110123-41109855 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 250 |
| Conread position: | 1101-1344 |
| Cow position: | chr20:4157423-4157663 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 1111-1326 |
| Cow position: | chr20:24849815-24850029 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 1112-1311 |
| Cow position: | chr20:33178504-33178314 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1120-1311 |
| Cow position: | chr20:16979769-16979961 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 131, 7 |
| Conread position: | 1120-1312 |
| Cow position: | chr20:39405783-39405974 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 1121-1324 |
| Cow position: | chr20:10838191-10837990 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 1121-1335 |
| Cow position: | chr20:19266179-19266382 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1125-1321 |
| Cow position: | chr20:5763269-5763072 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 124, 153 |
| Conread position: | 1125-1332 |
| Cow position: | chr20:15073811-15073597 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 55 |
| Conread position: | 1126-1235 |
| Cow position: | chr20:5576801-5576910 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1126-1308 |
| Cow position: | chr20:1205905-1205728 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 61 |
| Conread position: | 1126-1312 |
| Cow position: | chr20:10759447-10759263 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 101, 154 |
| Conread position: | 1126-1324 |
| Cow position: | chr20:4934043-4933845 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 1126-1340 |
| Cow position: | chr20:25823304-25823518 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 1126-1340 |
| Cow position: | chr20:39220690-39220484 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 123, 59 |
| Conread position: | 1127-1321 |
| Cow position: | chr20:17670210-17670401 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 126, 168 |
| Conread position: | 1130-1341 |
| Cow position: | chr20:19865282-19865489 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 1130-1345 |
| Cow position: | chr20:2456062-2456271 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 1131-1333 |
| Cow position: | chr20:7100812-7101020 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1132-1311 |
| Cow position: | chr20:42254893-42255071 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1132-1343 |
| Cow position: | chr20:14679654-14679860 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 40 |
| Conread position: | 1139-1324 |
| Cow position: | chr20:9706881-9706693 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1315 |
| Cow position: | chr20:6903353-6903529 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 1140-1324 |
| Cow position: | chr20:20359743-20359558 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 152 |
| Conread position: | 1140-1324 |
| Cow position: | chr20:37028859-37029047 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 142 |
| Conread position: | 1140-1330 |
| Cow position: | chr20:25686308-25686115 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 1141-1308 |
| Cow position: | chr20:18530476-18530644 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 1141-1321 |
| Cow position: | chr20:32972591-32972768 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 1159-1344 |
| Cow position: | chr20:6105095-6104906 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1172-1330 |
| Cow position: | chr20:39669016-39669174 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 1176-1321 |
| Cow position: | chr20:37136161-37136309 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1201-1331 |
| Cow position: | chr20:32975302-32975430 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 94 |
Show alignments to all cow chromosomes.