Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1046-1321 |
| Cow position: | chr21:33947287-33947012 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 1048-1331 |
| Cow position: | chr21:47715597-47715292 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 203 |
| Conread position: | 1058-1344 |
| Cow position: | chr21:34565256-34564947 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 161 |
| Conread position: | 1059-1335 |
| Cow position: | chr21:44093738-44094020 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 1059-1362 |
| Cow position: | chr21:44754820-44754507 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 79, 121 |
| Conread position: | 1060-1292 |
| Cow position: | chr21:26753454-26753705 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 227 |
| Conread position: | 1076-1273 |
| Cow position: | chr21:37848214-37848419 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 1076-1315 |
| Cow position: | chr21:22353255-22353000 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 148 |
| Conread position: | 1078-1332 |
| Cow position: | chr21:3254152-3254407 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 1097-1338 |
| Cow position: | chr21:24674729-24674975 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 1107-1291 |
| Cow position: | chr21:13418202-13418021 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 142, 20 |
| Conread position: | 1112-1290 |
| Cow position: | chr21:23767902-23768082 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 16, 156 |
| Conread position: | 1112-1290 |
| Cow position: | chr21:23786063-23786243 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 16, 156 |
| Conread position: | 1112-1333 |
| Cow position: | chr21:13358355-13358582 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 1114-1315 |
| Cow position: | chr21:37121179-37120975 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 1121-1291 |
| Cow position: | chr21:31662046-31662217 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 138, 5 |
| Conread position: | 1121-1321 |
| Cow position: | chr21:23397805-23397609 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 1125-1272 |
| Cow position: | chr21:24698526-24698675 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 1125-1324 |
| Cow position: | chr21:15239328-15239523 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 1125-1329 |
| Cow position: | chr21:4098918-4099117 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 46 |
| Conread position: | 1125-1329 |
| Cow position: | chr21:39528558-39528760 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 1126-1330 |
| Cow position: | chr21:9353493-9353700 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1126-1330 |
| Cow position: | chr21:21181225-21181429 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 1126-1332 |
| Cow position: | chr21:7483303-7483100 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 67, 132 |
| Conread position: | 1126-1337 |
| Cow position: | chr21:49649680-49649871 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1126-1356 |
| Cow position: | chr21:18941788-18941555 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 100 |
| Conread position: | 1128-1330 |
| Cow position: | chr21:45355881-45356086 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1130-1312 |
| Cow position: | chr21:12087639-12087830 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 1130-1318 |
| Cow position: | chr21:4723531-4723721 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1130-1318 |
| Cow position: | chr21:34739894-34740085 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1130-1324 |
| Cow position: | chr21:31662517-31662712 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 160 |
| Conread position: | 1130-1335 |
| Cow position: | chr21:23801078-23800874 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 81, 159 |
| Conread position: | 1130-1338 |
| Cow position: | chr21:25286567-25286773 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 123, 96 |
| Conread position: | 1131-1326 |
| Cow position: | chr21:15742038-15741835 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1132-1343 |
| Cow position: | chr21:31576548-31576753 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 1135-1300 |
| Cow position: | chr21:35997231-35997394 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 1137-1333 |
| Cow position: | chr21:17807077-17806885 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 1139-1324 |
| Cow position: | chr21:46242178-46241994 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 1139-1333 |
| Cow position: | chr21:9940129-9939936 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 1140-1315 |
| Cow position: | chr21:13737114-13737284 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 1140-1321 |
| Cow position: | chr21:4276542-4276360 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 111, 80 |
| Conread position: | 1140-1321 |
| Cow position: | chr21:39509326-39509146 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 1142-1344 |
| Cow position: | chr21:25800462-25800657 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 153 |
| Conread position: | 1144-1319 |
| Cow position: | chr21:23397598-23397424 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 113, 33 |
| Conread position: | 1145-1334 |
| Cow position: | chr21:17428561-17428751 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 1146-1335 |
| Cow position: | chr21:2413119-2413306 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1155-1319 |
| Cow position: | chr21:22398237-22398389 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1155-1324 |
| Cow position: | chr21:26147153-26147324 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 1155-1324 |
| Cow position: | chr21:41197970-41197806 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 1163-1321 |
| Cow position: | chr21:46607507-46607350 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 1164-1333 |
| Cow position: | chr21:49661751-49661586 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 124 |
| Conread position: | 1167-1321 |
| Cow position: | chr21:44220450-44220609 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1180-1330 |
| Cow position: | chr21:6012813-6012661 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.