Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1318 |
| Cow position: | chr25:17702091-17701818 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 1047-1334 |
| Cow position: | chr25:18448720-18449000 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 1048-1326 |
| Cow position: | chr25:4716156-4716437 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 1057-1321 |
| Cow position: | chr25:36501347-36501063 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1059-1331 |
| Cow position: | chr25:12932522-12932813 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1059-1337 |
| Cow position: | chr25:40957068-40956795 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 192, 17 |
| Conread position: | 1061-1329 |
| Cow position: | chr25:6177947-6178222 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 1062-1291 |
| Cow position: | chr25:10012149-10011912 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 1076-1290 |
| Cow position: | chr25:27504267-27504053 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 1076-1331 |
| Cow position: | chr25:14467169-14466910 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 1111-1337 |
| Cow position: | chr25:14570341-14570558 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 143, 15 |
| Conread position: | 1120-1321 |
| Cow position: | chr25:18000558-18000354 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 1120-1331 |
| Cow position: | chr25:33205104-33204897 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 99 |
| Conread position: | 1123-1327 |
| Cow position: | chr25:8576671-8576876 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1126-1301 |
| Cow position: | chr25:8080706-8080883 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 1126-1307 |
| Cow position: | chr25:13560231-13560051 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 1126-1324 |
| Cow position: | chr25:41094155-41093957 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 125, 93 |
| Conread position: | 1126-1331 |
| Cow position: | chr25:22575544-22575342 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 93 |
| Conread position: | 1126-1331 |
| Cow position: | chr25:24405753-24405547 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 133, 199 |
| Conread position: | 1130-1318 |
| Cow position: | chr25:20076481-20076672 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1130-1327 |
| Cow position: | chr25:8512103-8511909 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 1130-1334 |
| Cow position: | chr25:30021058-30021262 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 129, 48 |
| Conread position: | 1131-1327 |
| Cow position: | chr25:34970450-34970638 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 1131-1330 |
| Cow position: | chr25:26240524-26240725 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1132-1324 |
| Cow position: | chr25:26457691-26457497 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1136-1310 |
| Cow position: | chr25:13562428-13562598 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1136-1318 |
| Cow position: | chr25:23410658-23410833 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 1136-1332 |
| Cow position: | chr25:24136446-24136258 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 1138-1312 |
| Cow position: | chr25:13799943-13800119 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1138-1329 |
| Cow position: | chr25:15024904-15025093 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 1139-1313 |
| Cow position: | chr25:20811380-20811207 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 120, 149 |
| Conread position: | 1139-1326 |
| Cow position: | chr25:5365522-5365715 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 1140-1287 |
| Cow position: | chr25:34379111-34378962 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1140-1344 |
| Cow position: | chr25:14075298-14075503 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1141-1342 |
| Cow position: | chr25:18239505-18239711 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 1144-1349 |
| Cow position: | chr25:20428318-20428521 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 1145-1314 |
| Cow position: | chr25:23248741-23248571 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1168-1308 |
| Cow position: | chr25:20885063-20884924 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 1172-1314 |
| Cow position: | chr25:18228204-18228346 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 1176-1321 |
| Cow position: | chr25:11040969-11041110 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 1223-1335 |
| Cow position: | chr25:32594789-32594674 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.