Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1056-1324 |
| Cow position: | chr28:3823223-3822954 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 1058-1308 |
| Cow position: | chr28:7805506-7805255 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1058-1311 |
| Cow position: | chr28:15677788-15678061 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 1076-1274 |
| Cow position: | chr28:21873688-21873897 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1077-1293 |
| Cow position: | chr28:25340201-25340426 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 113 |
| Conread position: | 1081-1312 |
| Cow position: | chr28:20963588-20963353 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1094-1331 |
| Cow position: | chr28:31373056-31373299 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 31, 158 |
| Conread position: | 1096-1340 |
| Cow position: | chr28:27987837-27988073 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 1113-1300 |
| Cow position: | chr28:3769689-3769507 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 1120-1330 |
| Cow position: | chr28:15081940-15081733 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 1120-1331 |
| Cow position: | chr28:19253464-19253672 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 139, 108 |
| Conread position: | 1125-1258 |
| Cow position: | chr28:12046927-12046793 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1125-1321 |
| Cow position: | chr28:18934440-18934638 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1125-1350 |
| Cow position: | chr28:2517824-2517607 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 1126-1331 |
| Cow position: | chr28:7540170-7539964 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 131, 199 |
| Conread position: | 1126-1337 |
| Cow position: | chr28:17345879-17345666 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 1126-1352 |
| Cow position: | chr28:5475040-5474817 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 218, 29 |
| Conread position: | 1127-1293 |
| Cow position: | chr28:8335950-8336118 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1127-1332 |
| Cow position: | chr28:5979911-5980114 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 130, 98 |
| Conread position: | 1130-1304 |
| Cow position: | chr28:20275121-20275295 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 125, 73 |
| Conread position: | 1130-1318 |
| Cow position: | chr28:11181171-11180984 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 1130-1318 |
| Cow position: | chr28:23703398-23703587 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 107 |
| Conread position: | 1130-1320 |
| Cow position: | chr28:12999089-12999277 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 1130-1326 |
| Cow position: | chr28:4274848-4274655 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 189, 47 |
| Conread position: | 1130-1329 |
| Cow position: | chr28:1608179-1608382 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 1130-1329 |
| Cow position: | chr28:31165991-31165788 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1130-1332 |
| Cow position: | chr28:6643291-6643087 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 126, 197 |
| Conread position: | 1130-1335 |
| Cow position: | chr28:25825871-25825666 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 127, 60 |
| Conread position: | 1132-1350 |
| Cow position: | chr28:1202247-1202035 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 117, 47 |
| Conread position: | 1133-1315 |
| Cow position: | chr28:9176757-9176581 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 124, 83 |
| Conread position: | 1140-1311 |
| Cow position: | chr28:25564086-25564257 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1140-1321 |
| Cow position: | chr28:9294492-9294308 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1324 |
| Cow position: | chr28:11500886-11500705 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 1140-1337 |
| Cow position: | chr28:24500206-24500407 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 1141-1335 |
| Cow position: | chr28:14508369-14508168 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 1151-1324 |
| Cow position: | chr28:15406073-15406241 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 1160-1329 |
| Cow position: | chr28:3940175-3940001 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 1165-1326 |
| Cow position: | chr28:34749761-34749924 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 1167-1331 |
| Cow position: | chr28:6578099-6578264 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 1170-1344 |
| Cow position: | chr28:17625141-17624963 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.