Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1331 |
| Cow position: | chr29:7408005-7407717 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 1058-1333 |
| Cow position: | chr29:709228-708941 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 1059-1332 |
| Cow position: | chr29:35442569-35442274 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 23, 287 |
| Conread position: | 1067-1340 |
| Cow position: | chr29:4444642-4444917 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 143, 9 |
| Conread position: | 1075-1331 |
| Cow position: | chr29:11677548-11677274 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1075-1334 |
| Cow position: | chr29:15940703-15940447 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 163 |
| Conread position: | 1076-1321 |
| Cow position: | chr29:6150182-6149939 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 183, 59 |
| Conread position: | 1076-1331 |
| Cow position: | chr29:13634365-13634113 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 1108-1346 |
| Cow position: | chr29:10153835-10153591 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 75 |
| Conread position: | 1111-1321 |
| Cow position: | chr29:37961008-37960800 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 1120-1293 |
| Cow position: | chr29:25426681-25426509 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 43 |
| Conread position: | 1120-1321 |
| Cow position: | chr29:5616893-5616690 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 5 |
| Conread position: | 1120-1334 |
| Cow position: | chr29:942605-942811 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 1121-1324 |
| Cow position: | chr29:11005710-11005911 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 176 |
| Conread position: | 1121-1325 |
| Cow position: | chr29:18963710-18963916 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 130, 176 |
| Conread position: | 1121-1331 |
| Cow position: | chr29:4367701-4367912 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 63 |
| Conread position: | 1121-1334 |
| Cow position: | chr29:1340760-1340971 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 139, 50 |
| Conread position: | 1121-1366 |
| Cow position: | chr29:18072921-18073162 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 138, 9 |
| Conread position: | 1123-1308 |
| Cow position: | chr29:2274862-2274680 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 139, 172 |
| Conread position: | 1126-1310 |
| Cow position: | chr29:26985207-26985394 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1126-1314 |
| Cow position: | chr29:26298955-26299140 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 1126-1315 |
| Cow position: | chr29:22895707-22895899 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1126-1321 |
| Cow position: | chr29:21186891-21186696 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 85, 21 |
| Conread position: | 1126-1331 |
| Cow position: | chr29:29302678-29302473 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 160 |
| Conread position: | 1126-1353 |
| Cow position: | chr29:7663288-7663059 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 125, 84 |
| Conread position: | 1128-1312 |
| Cow position: | chr29:6772116-6772298 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 36 |
| Conread position: | 1129-1321 |
| Cow position: | chr29:21174719-21174529 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 1130-1308 |
| Cow position: | chr29:39023357-39023173 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1130-1321 |
| Cow position: | chr29:40337553-40337364 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 120, 81 |
| Conread position: | 1130-1345 |
| Cow position: | chr29:21265747-21265962 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 1131-1321 |
| Cow position: | chr29:30350946-30350753 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1131-1329 |
| Cow position: | chr29:11366224-11366418 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 80 |
| Conread position: | 1140-1339 |
| Cow position: | chr29:44550490-44550702 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1141-1315 |
| Cow position: | chr29:29559724-29559550 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 85 |
| Conread position: | 1143-1337 |
| Cow position: | chr29:19907355-19907541 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1147-1331 |
| Cow position: | chr29:19607523-19607337 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1150-1334 |
| Cow position: | chr29:21012338-21012155 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 1161-1354 |
| Cow position: | chr29:15042465-15042656 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 90, 134 |
| Conread position: | 1163-1358 |
| Cow position: | chr29:30544409-30544216 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 1176-1318 |
| Cow position: | chr29:942850-942998 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1176-1321 |
| Cow position: | chr29:8794381-8794531 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1176-1344 |
| Cow position: | chr29:32080577-32080748 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1179-1331 |
| Cow position: | chr29:19524-19680 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.