Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1057-1321 |
| Cow position: | chr3:22953992-22953730 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 119 |
| Conread position: | 1057-1324 |
| Cow position: | chr3:53509815-53509537 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 1058-1321 |
| Cow position: | chr3:22271563-22271301 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1058-1331 |
| Cow position: | chr3:9074456-9074178 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 1059-1291 |
| Cow position: | chr3:46094706-46094947 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 1066-1328 |
| Cow position: | chr3:54340535-54340260 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 1068-1334 |
| Cow position: | chr3:26089097-26088830 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 1070-1324 |
| Cow position: | chr3:23111624-23111356 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 234 |
| Conread position: | 1073-1344 |
| Cow position: | chr3:5419956-5419689 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1076-1280 |
| Cow position: | chr3:23476891-23477105 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 1076-1300 |
| Cow position: | chr3:4329232-4329455 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 1076-1310 |
| Cow position: | chr3:25250798-25251049 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1076-1332 |
| Cow position: | chr3:65771420-65771170 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 1081-1308 |
| Cow position: | chr3:64484165-64484391 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 1082-1339 |
| Cow position: | chr3:20471450-20471193 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 1098-1328 |
| Cow position: | chr3:57830156-57829922 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 1111-1346 |
| Cow position: | chr3:41550430-41550193 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 1116-1331 |
| Cow position: | chr3:24300310-24300530 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 143, 21 |
| Conread position: | 1117-1318 |
| Cow position: | chr3:55373615-55373414 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 1120-1293 |
| Cow position: | chr3:36204504-36204680 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 144 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1121-1320 |
| Cow position: | chr3:48271287-48271480 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1121-1335 |
| Cow position: | chr3:48629636-48629423 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 175 |
| Conread position: | 1124-1331 |
| Cow position: | chr3:54881723-54881940 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1124-1338 |
| Cow position: | chr3:27532697-27532490 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 1125-1287 |
| Cow position: | chr3:8457612-8457776 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1125-1331 |
| Cow position: | chr3:73741912-73741703 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 84, 54 |
| Conread position: | 1125-1332 |
| Cow position: | chr3:62292162-62291960 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 1125-1335 |
| Cow position: | chr3:37186784-37186994 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 1126-1245 |
| Cow position: | chr3:15684963-15684844 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1126-1282 |
| Cow position: | chr3:33327667-33327826 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1126-1306 |
| Cow position: | chr3:34675681-34675863 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1126-1314 |
| Cow position: | chr3:59608461-59608645 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 127, 144 |
| Conread position: | 1126-1321 |
| Cow position: | chr3:28238614-28238429 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 1126-1323 |
| Cow position: | chr3:3736257-3736456 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 193 |
| Conread position: | 1126-1328 |
| Cow position: | chr3:42584501-42584700 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 1126-1331 |
| Cow position: | chr3:17634084-17633881 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 131, 108 |
| Conread position: | 1126-1331 |
| Cow position: | chr3:25076208-25076000 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1126-1331 |
| Cow position: | chr3:64536601-64536403 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 198, 14 |
| Conread position: | 1126-1332 |
| Cow position: | chr3:11310182-11309974 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 1126-1335 |
| Cow position: | chr3:51492743-51492955 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 127, 117 |
| Conread position: | 1126-1348 |
| Cow position: | chr3:77225077-77225297 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 127, 74 |
| Conread position: | 1127-1271 |
| Cow position: | chr3:13909463-13909603 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 1127-1313 |
| Cow position: | chr3:61116894-61116705 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1127-1324 |
| Cow position: | chr3:73436481-73436282 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1127-1344 |
| Cow position: | chr3:15221558-15221340 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 124, 181 |
| Conread position: | 1128-1293 |
| Cow position: | chr3:68262724-68262890 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1128-1313 |
| Cow position: | chr3:35278536-35278718 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 1129-1324 |
| Cow position: | chr3:58448098-58447909 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 124, 41 |
| Conread position: | 1130-1308 |
| Cow position: | chr3:10431567-10431742 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 129, 36 |
| Conread position: | 1130-1315 |
| Cow position: | chr3:39911092-39910910 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 1130-1318 |
| Cow position: | chr3:14505952-14505762 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1130-1318 |
| Cow position: | chr3:56483478-56483672 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1130-1320 |
| Cow position: | chr3:30839212-30839396 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 1130-1323 |
| Cow position: | chr3:53091453-53091635 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1130-1324 |
| Cow position: | chr3:61411090-61411279 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 1130-1330 |
| Cow position: | chr3:74611530-74611728 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 1130-1331 |
| Cow position: | chr3:24352823-24353023 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 1130-1331 |
| Cow position: | chr3:64172402-64172607 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1130-1334 |
| Cow position: | chr3:51781028-51780828 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 105 |
| Conread position: | 1131-1324 |
| Cow position: | chr3:68342285-68342102 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 1132-1326 |
| Cow position: | chr3:26493265-26493079 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1133-1318 |
| Cow position: | chr3:5601201-5601016 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 155 |
| Conread position: | 1133-1362 |
| Cow position: | chr3:11920066-11919841 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 1140-1290 |
| Cow position: | chr3:66708094-66707945 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1140-1324 |
| Cow position: | chr3:15655174-15654992 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 159 |
| Conread position: | 1140-1344 |
| Cow position: | chr3:20993785-20993992 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1344 |
| Cow position: | chr3:34315844-34315647 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 1140-1358 |
| Cow position: | chr3:41718369-41718581 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 1141-1315 |
| Cow position: | chr3:24538850-24539022 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 118, 37 |
| Conread position: | 1141-1318 |
| Cow position: | chr3:74205831-74205656 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 37 |
| Conread position: | 1141-1326 |
| Cow position: | chr3:9127468-9127274 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1141-1331 |
| Cow position: | chr3:42480592-42480778 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 96 |
| Conread position: | 1142-1320 |
| Cow position: | chr3:34086080-34085906 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 1143-1324 |
| Cow position: | chr3:70354257-70354079 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 1157-1318 |
| Cow position: | chr3:31247657-31247813 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 1164-1331 |
| Cow position: | chr3:26741035-26740876 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 62 |
| Conread position: | 1167-1327 |
| Cow position: | chr3:8746232-8746073 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 92, 121 |
| Conread position: | 1171-1324 |
| Cow position: | chr3:43590895-43591053 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1176-1339 |
| Cow position: | chr3:33797688-33797850 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 1190-1326 |
| Cow position: | chr3:44838281-44838414 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 1193-1354 |
| Cow position: | chr3:76913038-76913202 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 7, 131 |
| Conread position: | 1196-1333 |
| Cow position: | chr3:18866004-18865868 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 1207-1322 |
| Cow position: | chr3:76614940-76615056 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 105 |
Show alignments to all cow chromosomes.