Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1046-1314 |
| Cow position: | chr4:21862990-21862705 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1057-1331 |
| Cow position: | chr4:23494808-23495092 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 1058-1329 |
| Cow position: | chr4:2610117-2610400 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 1058-1329 |
| Cow position: | chr4:60030816-60031082 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 1059-1318 |
| Cow position: | chr4:35471221-35471486 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 1059-1329 |
| Cow position: | chr4:23758691-23758981 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 24, 250 |
| Conread position: | 1066-1331 |
| Cow position: | chr4:54146570-54146294 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 1066-1332 |
| Cow position: | chr4:62411771-62412035 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 1070-1275 |
| Cow position: | chr4:59719532-59719728 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 1071-1335 |
| Cow position: | chr4:6208382-6208640 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 1100-1331 |
| Cow position: | chr4:24432924-24433161 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1111-1318 |
| Cow position: | chr4:58707218-58707006 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 1111-1329 |
| Cow position: | chr4:22235289-22235504 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 1119-1330 |
| Cow position: | chr4:37035267-37035054 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1120-1318 |
| Cow position: | chr4:40433933-40433737 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 1125-1328 |
| Cow position: | chr4:22449547-22449342 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 127, 65 |
| Conread position: | 1126-1272 |
| Cow position: | chr4:36813353-36813501 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 1126-1302 |
| Cow position: | chr4:51123034-51123220 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1126-1314 |
| Cow position: | chr4:12697615-12697794 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 1126-1318 |
| Cow position: | chr4:25972875-25973067 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 1126-1330 |
| Cow position: | chr4:23166883-23167078 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 1126-1333 |
| Cow position: | chr4:17304418-17304205 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 59 |
| Conread position: | 1126-1340 |
| Cow position: | chr4:44279961-44279741 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1126-1344 |
| Cow position: | chr4:24187636-24187408 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 49, 208 |
| Conread position: | 1126-1344 |
| Cow position: | chr4:36945218-36944999 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 1126-1350 |
| Cow position: | chr4:5002740-5002954 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 128, 45 |
| Conread position: | 1126-1350 |
| Cow position: | chr4:20279303-20279522 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 133, 169 |
| Conread position: | 1126-1360 |
| Cow position: | chr4:14550816-14551043 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 129, 38 |
| Conread position: | 1130-1305 |
| Cow position: | chr4:243210-243387 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1130-1318 |
| Cow position: | chr4:45234894-45234703 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1130-1319 |
| Cow position: | chr4:1799889-1800075 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 1130-1324 |
| Cow position: | chr4:10992218-10992026 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1130-1331 |
| Cow position: | chr4:5580537-5580739 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 121, 182 |
| Conread position: | 1130-1335 |
| Cow position: | chr4:20066239-20066034 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 100 |
| Conread position: | 1130-1344 |
| Cow position: | chr4:2596895-2596677 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1130-1352 |
| Cow position: | chr4:38700178-38699960 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 189 |
| Conread position: | 1131-1310 |
| Cow position: | chr4:68795312-68795136 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1131-1332 |
| Cow position: | chr4:9799986-9800185 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 1132-1324 |
| Cow position: | chr4:35870187-35870378 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 1132-1353 |
| Cow position: | chr4:65604488-65604270 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 115, 39 |
| Conread position: | 1133-1324 |
| Cow position: | chr4:22249463-22249275 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 115, 48 |
| Conread position: | 1133-1343 |
| Cow position: | chr4:45919020-45919225 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 118, 44 |
| Conread position: | 1135-1321 |
| Cow position: | chr4:6443098-6442916 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 1135-1328 |
| Cow position: | chr4:51433394-51433588 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 125, 183 |
| Conread position: | 1138-1314 |
| Cow position: | chr4:52225992-52226168 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 1139-1324 |
| Cow position: | chr4:5913358-5913171 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 1140-1314 |
| Cow position: | chr4:5797955-5798129 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 149 |
| Conread position: | 1140-1315 |
| Cow position: | chr4:44665383-44665206 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1140-1331 |
| Cow position: | chr4:1374351-1374538 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 1140-1337 |
| Cow position: | chr4:13406698-13406881 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1141-1315 |
| Cow position: | chr4:19334892-19334716 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 1141-1322 |
| Cow position: | chr4:37880925-37881104 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 1141-1324 |
| Cow position: | chr4:29709776-29709585 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1147-1330 |
| Cow position: | chr4:10836172-10836357 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 162 |
| Conread position: | 1151-1315 |
| Cow position: | chr4:53616828-53616993 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 1156-1380 |
| Cow position: | chr4:54501018-54500794 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 1163-1304 |
| Cow position: | chr4:54797526-54797384 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 98, 83 |
| Conread position: | 1164-1327 |
| Cow position: | chr4:45115766-45115601 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1165-1314 |
| Cow position: | chr4:20599948-20600099 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 1168-1293 |
| Cow position: | chr4:20279505-20279633 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1171-1354 |
| Cow position: | chr4:34762314-34762134 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 100 |
| Conread position: | 1195-1306 |
| Cow position: | chr4:65116150-65116037 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1200-1324 |
| Cow position: | chr4:10463878-10463752 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.