Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1304 |
| Cow position: | chr5:41945779-41946036 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 1048-1353 |
| Cow position: | chr5:41604534-41604860 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 1058-1331 |
| Cow position: | chr5:37068809-37069098 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 22, 159 |
| Conread position: | 1058-1341 |
| Cow position: | chr5:27411479-27411181 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 256 |
| Conread position: | 1059-1331 |
| Cow position: | chr5:51502929-51503221 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 256 |
| Conread position: | 1059-1332 |
| Cow position: | chr5:47681087-47680801 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 278 |
| Conread position: | 1059-1333 |
| Cow position: | chr5:48573849-48573563 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 161 |
| Conread position: | 1060-1330 |
| Cow position: | chr5:18695098-18695373 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 1066-1331 |
| Cow position: | chr5:56385156-56385431 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 17, 171 |
| Conread position: | 1076-1345 |
| Cow position: | chr5:4631058-4631326 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 1081-1342 |
| Cow position: | chr5:50425529-50425262 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 1103-1345 |
| Cow position: | chr5:23641027-23640786 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 1111-1320 |
| Cow position: | chr5:3649463-3649259 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 148, 15 |
| Conread position: | 1111-1348 |
| Cow position: | chr5:48757934-48758169 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 1114-1343 |
| Cow position: | chr5:27102799-27102566 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1115-1319 |
| Cow position: | chr5:46798242-46798446 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 1121-1318 |
| Cow position: | chr5:15837885-15837692 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 132, 5 |
| Conread position: | 1121-1356 |
| Cow position: | chr5:1349789-1349555 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 105 |
| Conread position: | 1124-1319 |
| Cow position: | chr5:42316901-42316711 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 1126-1293 |
| Cow position: | chr5:4927556-4927382 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 122, 59 |
| Conread position: | 1126-1315 |
| Cow position: | chr5:63328883-63328700 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 1126-1321 |
| Cow position: | chr5:75687321-75687125 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 35, 174 |
| Conread position: | 1126-1322 |
| Cow position: | chr5:41598703-41598505 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1126-1324 |
| Cow position: | chr5:17028103-17028304 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1126-1324 |
| Cow position: | chr5:49945921-49946114 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 131, 54 |
| Conread position: | 1126-1330 |
| Cow position: | chr5:23366755-23366552 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 1126-1330 |
| Cow position: | chr5:39695660-39695866 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1126-1330 |
| Cow position: | chr5:58343867-58344072 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 52 |
| Conread position: | 1127-1336 |
| Cow position: | chr5:39442307-39442519 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1128-1291 |
| Cow position: | chr5:18553907-18554068 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 121, 76 |
| Conread position: | 1128-1311 |
| Cow position: | chr5:63188312-63188135 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1128-1329 |
| Cow position: | chr5:54090045-54090247 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 9, 171 |
| Conread position: | 1128-1337 |
| Cow position: | chr5:64399023-64399225 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 1130-1265 |
| Cow position: | chr5:34279590-34279457 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 1130-1269 |
| Cow position: | chr5:34184236-34184374 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1130-1291 |
| Cow position: | chr5:6987462-6987626 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 113, 143 |
| Conread position: | 1130-1311 |
| Cow position: | chr5:25919617-25919440 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 1130-1321 |
| Cow position: | chr5:23529266-23529077 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 1130-1324 |
| Cow position: | chr5:29756350-29756546 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 1130-1326 |
| Cow position: | chr5:29844292-29844491 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1130-1329 |
| Cow position: | chr5:47836560-47836764 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 102 |
| Conread position: | 1130-1331 |
| Cow position: | chr5:23527619-23527415 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 197 |
| Conread position: | 1131-1324 |
| Cow position: | chr5:25899858-25899667 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 1133-1324 |
| Cow position: | chr5:27419714-27419520 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1134-1348 |
| Cow position: | chr5:328173-327971 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 185, 85 |
| Conread position: | 1139-1343 |
| Cow position: | chr5:15483053-15483263 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 204 |
| Conread position: | 1140-1312 |
| Cow position: | chr5:30332977-30333147 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 119, 39 |
| Conread position: | 1140-1324 |
| Cow position: | chr5:36487673-36487486 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1140-1331 |
| Cow position: | chr5:18276504-18276693 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 88 |
| Conread position: | 1140-1332 |
| Cow position: | chr5:36028122-36027935 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 1140-1335 |
| Cow position: | chr5:58320446-58320251 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 1140-1345 |
| Cow position: | chr5:28946037-28945832 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 1140-1346 |
| Cow position: | chr5:31660635-31660431 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 129 |
| Conread position: | 1142-1318 |
| Cow position: | chr5:50859890-50860066 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 1143-1331 |
| Cow position: | chr5:3058949-3059133 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 119, 27 |
| Conread position: | 1144-1290 |
| Cow position: | chr5:7433133-7432984 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 1144-1330 |
| Cow position: | chr5:21531079-21530892 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 175 |
| Conread position: | 1144-1331 |
| Cow position: | chr5:66190014-66190200 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 1147-1324 |
| Cow position: | chr5:46611070-46610889 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1150-1293 |
| Cow position: | chr5:33342832-33342689 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 111, 137 |
| Conread position: | 1156-1333 |
| Cow position: | chr5:42049723-42049896 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 1164-1301 |
| Cow position: | chr5:6091611-6091478 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 1172-1336 |
| Cow position: | chr5:27293615-27293449 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1173-1332 |
| Cow position: | chr5:5929514-5929677 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1176-1330 |
| Cow position: | chr5:39134202-39134043 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1193-1333 |
| Cow position: | chr5:55411966-55411824 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 113 |
Show alignments to all cow chromosomes.