Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1019-1332 |
| Cow position: | chr6:28080005-28079687 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 280 |
| Conread position: | 1049-1318 |
| Cow position: | chr6:20196351-20196091 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 163, 68 |
| Conread position: | 1056-1330 |
| Cow position: | chr6:17736581-17736862 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 1057-1330 |
| Cow position: | chr6:28278625-28278902 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 1058-1308 |
| Cow position: | chr6:1907473-1907726 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 1058-1314 |
| Cow position: | chr6:32412683-32412429 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 1059-1314 |
| Cow position: | chr6:11789935-11790188 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 1059-1318 |
| Cow position: | chr6:20255459-20255190 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 62, 26 |
| Conread position: | 1059-1318 |
| Cow position: | chr6:38453838-38453565 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1059-1357 |
| Cow position: | chr6:48807062-48806758 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 1069-1311 |
| Cow position: | chr6:20754350-20754092 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1076-1266 |
| Cow position: | chr6:2582823-2583024 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1097-1285 |
| Cow position: | chr6:29412797-29412605 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 88 |
| Conread position: | 1098-1336 |
| Cow position: | chr6:6161595-6161835 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 1099-1321 |
| Cow position: | chr6:36652418-36652637 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 1106-1337 |
| Cow position: | chr6:24583218-24582993 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 1111-1318 |
| Cow position: | chr6:37612110-37612322 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 1111-1337 |
| Cow position: | chr6:24557893-24558114 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 150, 15 |
| Conread position: | 1114-1321 |
| Cow position: | chr6:13718775-13718984 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 1120-1308 |
| Cow position: | chr6:60503397-60503580 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 132, 106 |
| Conread position: | 1120-1332 |
| Cow position: | chr6:28083999-28083784 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 1121-1323 |
| Cow position: | chr6:64427242-64427447 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1121-1329 |
| Cow position: | chr6:6596593-6596793 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 127, 58 |
| Conread position: | 1125-1299 |
| Cow position: | chr6:54144328-54144500 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 134, 54 |
| Conread position: | 1125-1300 |
| Cow position: | chr6:16733441-16733613 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 1125-1321 |
| Cow position: | chr6:56376327-56376133 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 128, 169 |
| Conread position: | 1126-1318 |
| Cow position: | chr6:38018284-38018473 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1126-1318 |
| Cow position: | chr6:51840301-51840502 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1126-1321 |
| Cow position: | chr6:63197141-63196943 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1126-1331 |
| Cow position: | chr6:6943657-6943457 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 119, 64 |
| Conread position: | 1126-1331 |
| Cow position: | chr6:57118919-57118717 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 139, 163 |
| Conread position: | 1126-1332 |
| Cow position: | chr6:15943978-15943770 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 18 |
| Conread position: | 1126-1337 |
| Cow position: | chr6:24545636-24545848 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 199 |
| Conread position: | 1126-1343 |
| Cow position: | chr6:24223132-24222918 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 125, 49 |
| Conread position: | 1126-1344 |
| Cow position: | chr6:12421268-12421044 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 1126-1360 |
| Cow position: | chr6:4023125-4023361 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 1126-1360 |
| Cow position: | chr6:7835941-7836166 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 199, 39 |
| Conread position: | 1128-1257 |
| Cow position: | chr6:29754803-29754674 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1128-1321 |
| Cow position: | chr6:38914467-38914660 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 132, 57 |
| Conread position: | 1128-1324 |
| Cow position: | chr6:54479127-54478928 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1129-1324 |
| Cow position: | chr6:52705552-52705357 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 89 |
| Conread position: | 1130-1318 |
| Cow position: | chr6:2899543-2899349 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1130-1319 |
| Cow position: | chr6:33929521-33929336 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 140 |
| Conread position: | 1130-1321 |
| Cow position: | chr6:41041954-41042136 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 28 |
| Conread position: | 1130-1326 |
| Cow position: | chr6:15782488-15782290 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1130-1330 |
| Cow position: | chr6:15997187-15996992 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 1130-1346 |
| Cow position: | chr6:46676401-46676187 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 96 |
| Conread position: | 1130-1354 |
| Cow position: | chr6:53938990-53939212 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 1132-1324 |
| Cow position: | chr6:510275-510082 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 1132-1337 |
| Cow position: | chr6:41687993-41687785 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 106 |
| Conread position: | 1140-1306 |
| Cow position: | chr6:51294321-51294490 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1140-1311 |
| Cow position: | chr6:32276982-32277151 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 145 |
| Conread position: | 1140-1315 |
| Cow position: | chr6:36454560-36454382 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1140-1321 |
| Cow position: | chr6:35774947-35774763 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1140-1342 |
| Cow position: | chr6:55475291-55475496 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1142-1333 |
| Cow position: | chr6:47026515-47026709 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 1143-1324 |
| Cow position: | chr6:47192485-47192303 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1144-1320 |
| Cow position: | chr6:28069267-28069456 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1145-1324 |
| Cow position: | chr6:28164866-28165047 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1146-1337 |
| Cow position: | chr6:7707176-7707369 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 1149-1293 |
| Cow position: | chr6:29649151-29649297 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1149-1324 |
| Cow position: | chr6:23986416-23986243 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 1149-1338 |
| Cow position: | chr6:47772918-47772728 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 177 |
| Conread position: | 1155-1329 |
| Cow position: | chr6:17232396-17232228 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 1156-1332 |
| Cow position: | chr6:25224291-25224470 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1158-1345 |
| Cow position: | chr6:62379759-62379943 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 1163-1341 |
| Cow position: | chr6:28810939-28810766 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 1165-1331 |
| Cow position: | chr6:58765354-58765184 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1165-1333 |
| Cow position: | chr6:36892269-36892102 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 1165-1339 |
| Cow position: | chr6:22863199-22863032 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 1167-1330 |
| Cow position: | chr6:54203994-54203825 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1172-1328 |
| Cow position: | chr6:31225775-31225934 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.