Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1036-1258 |
| Cow position: | chr7:20176457-20176237 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 1047-1332 |
| Cow position: | chr7:26665631-26665338 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 255 |
| Conread position: | 1047-1335 |
| Cow position: | chr7:62610234-62610524 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 1055-1324 |
| Cow position: | chr7:37444807-37445089 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 182 |
| Conread position: | 1058-1286 |
| Cow position: | chr7:52751937-52751708 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 1058-1310 |
| Cow position: | chr7:51632836-51633108 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 1058-1330 |
| Cow position: | chr7:59245898-59246180 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 1058-1335 |
| Cow position: | chr7:1733261-1732967 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 187 |
| Conread position: | 1059-1311 |
| Cow position: | chr7:61681676-61681428 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 1064-1320 |
| Cow position: | chr7:51086115-51086377 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 1065-1329 |
| Cow position: | chr7:23131567-23131824 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 212, 11 |
| Conread position: | 1065-1335 |
| Cow position: | chr7:4512845-4512585 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 194, 11 |
| Conread position: | 1071-1324 |
| Cow position: | chr7:65460813-65461057 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 1076-1330 |
| Cow position: | chr7:39603290-39603553 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1076-1344 |
| Cow position: | chr7:20081107-20080828 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1081-1332 |
| Cow position: | chr7:35504528-35504776 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 179, 54 |
| Conread position: | 1098-1284 |
| Cow position: | chr7:23256859-23256670 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1111-1331 |
| Cow position: | chr7:53005363-53005576 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 1125-1293 |
| Cow position: | chr7:57311639-57311810 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1126-1299 |
| Cow position: | chr7:3748902-3748728 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 131, 57 |
| Conread position: | 1126-1324 |
| Cow position: | chr7:19399652-19399457 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 125, 169 |
| Conread position: | 1126-1329 |
| Cow position: | chr7:25685016-25684819 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 1126-1329 |
| Cow position: | chr7:62102622-62102819 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1126-1330 |
| Cow position: | chr7:43234420-43234215 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 129, 199 |
| Conread position: | 1126-1330 |
| Cow position: | chr7:57577284-57577072 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1126-1331 |
| Cow position: | chr7:26195777-26195576 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 122, 22 |
| Conread position: | 1126-1332 |
| Cow position: | chr7:11872580-11872366 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 199 |
| Conread position: | 1130-1291 |
| Cow position: | chr7:14044005-14044164 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 121, 41 |
| Conread position: | 1130-1291 |
| Cow position: | chr7:46103555-46103716 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 1130-1303 |
| Cow position: | chr7:664224-664051 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 1130-1318 |
| Cow position: | chr7:12424575-12424765 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 1130-1321 |
| Cow position: | chr7:13587210-13587402 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 96 |
| Conread position: | 1130-1338 |
| Cow position: | chr7:12755123-12754916 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 1130-1344 |
| Cow position: | chr7:25914458-25914247 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 1130-1345 |
| Cow position: | chr7:24667412-24667632 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1132-1324 |
| Cow position: | chr7:47172676-47172486 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 1133-1308 |
| Cow position: | chr7:45955960-45956133 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 1133-1315 |
| Cow position: | chr7:10099327-10099145 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 1135-1329 |
| Cow position: | chr7:41727982-41728171 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 6 |
| Conread position: | 1137-1329 |
| Cow position: | chr7:40192783-40192978 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 155 |
| Conread position: | 1138-1332 |
| Cow position: | chr7:50255678-50255866 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 1140-1293 |
| Cow position: | chr7:21545325-21545174 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 1140-1311 |
| Cow position: | chr7:41913659-41913490 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 1140-1315 |
| Cow position: | chr7:67839381-67839558 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 1140-1323 |
| Cow position: | chr7:64140098-64139922 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1140-1324 |
| Cow position: | chr7:20447-20633 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1140-1324 |
| Cow position: | chr7:20918311-20918120 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1141-1314 |
| Cow position: | chr7:48012600-48012774 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1141-1324 |
| Cow position: | chr7:69066735-69066922 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1141-1332 |
| Cow position: | chr7:1262068-1262262 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1141-1337 |
| Cow position: | chr7:57537484-57537282 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1141-1350 |
| Cow position: | chr7:27387936-27387728 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 110, 128 |
| Conread position: | 1142-1306 |
| Cow position: | chr7:31224371-31224202 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1144-1329 |
| Cow position: | chr7:24521297-24521478 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 82 |
| Conread position: | 1145-1314 |
| Cow position: | chr7:45748993-45748825 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 1151-1293 |
| Cow position: | chr7:59713767-59713910 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 1155-1336 |
| Cow position: | chr7:40261890-40261715 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 1157-1315 |
| Cow position: | chr7:48443493-48443336 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 1176-1331 |
| Cow position: | chr7:62470868-62471022 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 1176-1332 |
| Cow position: | chr7:66206664-66206822 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 1181-1337 |
| Cow position: | chr7:25857392-25857236 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 108 |
| Conread position: | 1183-1340 |
| Cow position: | chr7:5220932-5221089 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 1207-1324 |
| Cow position: | chr7:11155726-11155607 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.