Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1047-1331 |
| Cow position: | chr9:41958651-41958933 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 1048-1326 |
| Cow position: | chr9:43037605-43037326 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 1057-1291 |
| Cow position: | chr9:2863567-2863324 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 31, 219 |
| Conread position: | 1057-1291 |
| Cow position: | chr9:18093530-18093763 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 1058-1335 |
| Cow position: | chr9:25469176-25468889 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 1058-1340 |
| Cow position: | chr9:3959196-3958907 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 25, 229 |
| Conread position: | 1059-1321 |
| Cow position: | chr9:8617936-8617680 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 1059-1328 |
| Cow position: | chr9:47931234-47930954 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 1059-1329 |
| Cow position: | chr9:56747009-56747284 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 155 |
| Conread position: | 1060-1238 |
| Cow position: | chr9:49986072-49985896 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 1066-1373 |
| Cow position: | chr9:30020095-30019779 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 152 |
| Conread position: | 1067-1331 |
| Cow position: | chr9:32266271-32266547 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 214 |
| Conread position: | 1069-1331 |
| Cow position: | chr9:36827791-36827540 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 1076-1292 |
| Cow position: | chr9:34568622-34568832 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 175, 29 |
| Conread position: | 1078-1321 |
| Cow position: | chr9:15684695-15684937 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 179, 9 |
| Conread position: | 1100-1318 |
| Cow position: | chr9:33668802-33668578 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 1103-1337 |
| Cow position: | chr9:62330927-62331164 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1111-1326 |
| Cow position: | chr9:39428739-39428954 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 1118-1321 |
| Cow position: | chr9:8657377-8657581 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 1120-1273 |
| Cow position: | chr9:4858589-4858434 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1121-1324 |
| Cow position: | chr9:3845162-3845353 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1121-1331 |
| Cow position: | chr9:20839676-20839468 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 58 |
| Conread position: | 1121-1370 |
| Cow position: | chr9:54206273-54206526 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 1125-1327 |
| Cow position: | chr9:4538812-4539015 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 1125-1337 |
| Cow position: | chr9:12499058-12498841 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 1126-1245 |
| Cow position: | chr9:11201636-11201517 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1126-1291 |
| Cow position: | chr9:24837582-24837416 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 1126-1298 |
| Cow position: | chr9:5059273-5059442 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 1126-1303 |
| Cow position: | chr9:9200677-9200854 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 102 |
| Conread position: | 1126-1310 |
| Cow position: | chr9:32817095-32817279 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 133, 164 |
| Conread position: | 1126-1311 |
| Cow position: | chr9:34204176-34203989 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1126-1315 |
| Cow position: | chr9:53794485-53794672 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 1126-1318 |
| Cow position: | chr9:43911975-43911786 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 1126-1325 |
| Cow position: | chr9:26645973-26645766 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 1126-1332 |
| Cow position: | chr9:8599652-8599445 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 1126-1333 |
| Cow position: | chr9:26559565-26559776 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 1126-1335 |
| Cow position: | chr9:27292233-27292441 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 1126-1338 |
| Cow position: | chr9:2888029-2887807 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1126-1345 |
| Cow position: | chr9:29808500-29808279 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 1126-1366 |
| Cow position: | chr9:10666979-10667214 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 238, 46 |
| Conread position: | 1127-1331 |
| Cow position: | chr9:20896942-20896738 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 1128-1344 |
| Cow position: | chr9:21537312-21537093 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 1129-1334 |
| Cow position: | chr9:20200338-20200138 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 145 |
| Conread position: | 1130-1307 |
| Cow position: | chr9:15033945-15033772 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1130-1315 |
| Cow position: | chr9:55562543-55562352 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1130-1324 |
| Cow position: | chr9:40007900-40007709 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 121, 34 |
| Conread position: | 1130-1330 |
| Cow position: | chr9:63597873-63597678 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 1130-1336 |
| Cow position: | chr9:32115558-32115764 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 1131-1293 |
| Cow position: | chr9:59761592-59761756 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1131-1346 |
| Cow position: | chr9:42037695-42037477 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1132-1325 |
| Cow position: | chr9:54437305-54437104 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 132 |
| Conread position: | 1134-1318 |
| Cow position: | chr9:16745711-16745534 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 1136-1321 |
| Cow position: | chr9:3169490-3169668 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 1136-1327 |
| Cow position: | chr9:17110805-17110617 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 1140-1310 |
| Cow position: | chr9:6214121-6214288 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1140-1349 |
| Cow position: | chr9:38289293-38289487 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 1147-1324 |
| Cow position: | chr9:28983208-28983028 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 1150-1321 |
| Cow position: | chr9:5399159-5398985 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1150-1345 |
| Cow position: | chr9:60549388-60549586 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 174 |
| Conread position: | 1155-1328 |
| Cow position: | chr9:41561255-41561430 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1164-1330 |
| Cow position: | chr9:50001722-50001557 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 1165-1318 |
| Cow position: | chr9:6347002-6346849 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1179-1327 |
| Cow position: | chr9:42900891-42900745 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 1190-1330 |
| Cow position: | chr9:21566628-21566769 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 1206-1346 |
| Cow position: | chr9:43944526-43944668 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.