Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002H01.5 |
| Conread position: | 1046-1324 |
| Cow position: | chrX:39415459-39415160 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 76, 151 |
| Conread position: | 1047-1295 |
| Cow position: | chrX:17042600-17042863 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1047-1330 |
| Cow position: | chrX:19678359-19678064 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 1048-1307 |
| Cow position: | chrX:29408087-29407831 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 162, 22 |
| Conread position: | 1057-1325 |
| Cow position: | chrX:47178075-47178354 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 166 |
| Conread position: | 1058-1339 |
| Cow position: | chrX:19878963-19879261 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 250 |
| Conread position: | 1059-1319 |
| Cow position: | chrX:15329566-15329847 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1059-1346 |
| Cow position: | chrX:11746767-11747065 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 1065-1293 |
| Cow position: | chrX:17630852-17630622 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 131, 11 |
| Conread position: | 1065-1301 |
| Cow position: | chrX:2300877-2301113 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 192, 11 |
| Conread position: | 1068-1321 |
| Cow position: | chrX:20376925-20377170 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 183, 8 |
| Conread position: | 1069-1331 |
| Cow position: | chrX:38999785-39000065 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 238 |
| Conread position: | 1074-1324 |
| Cow position: | chrX:34470670-34470920 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 1077-1312 |
| Cow position: | chrX:37760825-37761068 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 1077-1333 |
| Cow position: | chrX:29874409-29874151 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 183, 49 |
| Conread position: | 1120-1331 |
| Cow position: | chrX:41083918-41084133 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1121-1298 |
| Cow position: | chrX:159751-159575 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 138, 55 |
| Conread position: | 1121-1314 |
| Cow position: | chrX:40692746-40692552 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 1121-1330 |
| Cow position: | chrX:24132146-24131943 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 126, 149 |
| Conread position: | 1125-1311 |
| Cow position: | chrX:18142444-18142263 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 10 |
| Conread position: | 1125-1318 |
| Cow position: | chrX:17964514-17964322 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 85, 172 |
| Conread position: | 1125-1328 |
| Cow position: | chrX:15049503-15049696 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 130, 40 |
| Conread position: | 1125-1329 |
| Cow position: | chrX:15305291-15305082 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 201 |
| Conread position: | 1125-1354 |
| Cow position: | chrX:39339099-39338870 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 174 |
| Conread position: | 1126-1244 |
| Cow position: | chrX:28111519-28111637 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1126-1263 |
| Cow position: | chrX:3154233-3154096 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 124 |
| Conread position: | 1126-1291 |
| Cow position: | chrX:31602667-31602834 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1126-1299 |
| Cow position: | chrX:630300-630123 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1126-1306 |
| Cow position: | chrX:31340720-31340902 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 1126-1330 |
| Cow position: | chrX:16514252-16514059 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1126-1330 |
| Cow position: | chrX:25713805-25714011 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1126-1330 |
| Cow position: | chrX:36009903-36009697 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 128, 169 |
| Conread position: | 1126-1343 |
| Cow position: | chrX:22481772-22481568 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1127-1324 |
| Cow position: | chrX:23414358-23414166 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 124, 91 |
| Conread position: | 1128-1340 |
| Cow position: | chrX:22326134-22326340 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 1130-1286 |
| Cow position: | chrX:16419164-16419318 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1130-1321 |
| Cow position: | chrX:28929856-28930042 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 1130-1321 |
| Cow position: | chrX:30980122-30979929 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1130-1330 |
| Cow position: | chrX:10959382-10959180 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1130-1331 |
| Cow position: | chrX:39126339-39126540 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 168 |
| Conread position: | 1130-1331 |
| Cow position: | chrX:46083984-46084188 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 197 |
| Conread position: | 1130-1333 |
| Cow position: | chrX:20791802-20791601 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 90, 166 |
| Conread position: | 1130-1334 |
| Cow position: | chrX:21664706-21664505 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 41 |
| Conread position: | 1130-1335 |
| Cow position: | chrX:33802990-33802787 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1130-1339 |
| Cow position: | chrX:27176299-27176086 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 126, 211 |
| Conread position: | 1130-1344 |
| Cow position: | chrX:12304574-12304790 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1130-1351 |
| Cow position: | chrX:21640443-21640660 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 1132-1327 |
| Cow position: | chrX:8780059-8780255 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 193 |
| Conread position: | 1133-1311 |
| Cow position: | chrX:35759920-35759739 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1133-1318 |
| Cow position: | chrX:48089388-48089200 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1135-1329 |
| Cow position: | chrX:16292001-16291802 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 100 |
| Conread position: | 1135-1358 |
| Cow position: | chrX:2786538-2786322 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 1136-1332 |
| Cow position: | chrX:27771553-27771360 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 125, 43 |
| Conread position: | 1138-1336 |
| Cow position: | chrX:6676846-6677049 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1140-1305 |
| Cow position: | chrX:29761661-29761493 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 1140-1314 |
| Cow position: | chrX:19930676-19930843 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 1140-1315 |
| Cow position: | chrX:7497266-7497434 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 1140-1318 |
| Cow position: | chrX:42011304-42011485 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 1140-1321 |
| Cow position: | chrX:6674896-6674708 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 1140-1321 |
| Cow position: | chrX:25338211-25338391 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 115, 160 |
| Conread position: | 1140-1324 |
| Cow position: | chrX:6203564-6203751 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1140-1324 |
| Cow position: | chrX:43426318-43426501 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 71, 156 |
| Conread position: | 1140-1329 |
| Cow position: | chrX:38722144-38722333 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 1140-1333 |
| Cow position: | chrX:27276718-27276915 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 191 |
| Conread position: | 1141-1321 |
| Cow position: | chrX:32431648-32431826 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 155 |
| Conread position: | 1148-1300 |
| Cow position: | chrX:10289594-10289444 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 113, 7 |
| Conread position: | 1155-1327 |
| Cow position: | chrX:1503367-1503540 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 1162-1324 |
| Cow position: | chrX:31273246-31273412 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1163-1324 |
| Cow position: | chrX:30483963-30483800 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 1164-1335 |
| Cow position: | chrX:46028714-46028543 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 160 |
| Conread position: | 1165-1318 |
| Cow position: | chrX:48428561-48428717 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1166-1315 |
| Cow position: | chrX:37186211-37186360 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 1171-1291 |
| Cow position: | chrX:3951095-3951217 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1172-1318 |
| Cow position: | chrX:17952920-17952772 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1174-1332 |
| Cow position: | chrX:4545296-4545139 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 1181-1319 |
| Cow position: | chrX:29675563-29675704 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1200-1351 |
| Cow position: | chrX:29056372-29056526 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.