Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002J20.3 |
| Conread position: | 2-304 |
| Cow position: | chr24:6293287-6293591 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 2-332 |
| Cow position: | chr24:6292512-6292843 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 136 |
| Conread position: | 2-433 |
| Cow position: | chr24:6283863-6284293 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 2-511 |
| Cow position: | chr24:6288811-6289315 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 3-470 |
| Cow position: | chr24:6285719-6286185 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 78 |
| Conread position: | 3-497 |
| Cow position: | chr24:6283486-6283975 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 29 |
| Conread position: | 3-499 |
| Cow position: | chr24:6292125-6292625 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 340 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 171, 135 |
| Conread position: | 3-518 |
| Cow position: | chr24:6288336-6288843 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 213 |
| Conread position: | 3-519 |
| Cow position: | chr24:6287954-6288464 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 59 |
| Conread position: | 3-521 |
| Cow position: | chr24:6286999-6287504 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 78 |
| Conread position: | 3-522 |
| Cow position: | chr24:6290708-6291210 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 217 |
| Conread position: | 3-537 |
| Cow position: | chr24:6290223-6290756 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 51 |
| Conread position: | 8-377 |
| Cow position: | chr24:6290989-6291358 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 79 |
| Conread position: | 8-404 |
| Cow position: | chr24:6291940-6292343 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 8-483 |
| Cow position: | chr24:6293799-6294257 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 231 |
| Conread position: | 8-484 |
| Cow position: | chr24:6293108-6293577 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 8-522 |
| Cow position: | chr24:6293017-6293516 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 8-525 |
| Cow position: | chr24:6288438-6288942 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 118 |
| Conread position: | 8-537 |
| Cow position: | chr24:6287476-6288002 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 54 |
| Conread position: | 9-412 |
| Cow position: | chr24:6293202-6293605 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 165, 44 |
| Conread position: | 10-473 |
| Cow position: | chr24:6289668-6290113 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 180 |
| Conread position: | 10-499 |
| Cow position: | chr24:6290038-6290527 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 10-501 |
| Cow position: | chr24:6286912-6287392 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 67 |
| Conread position: | 10-518 |
| Cow position: | chr24:6285632-6286130 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 71 |
| Conread position: | 11-200 |
| Cow position: | chr24:6291184-6291371 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 11-425 |
| Cow position: | chr24:6285918-6286319 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 11-499 |
| Cow position: | chr24:6290423-6290916 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 121 |
| Conread position: | 11-499 |
| Cow position: | chr24:6290813-6291286 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 48 |
| Conread position: | 12-298 |
| Cow position: | chr24:6289007-6289294 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 13-524 |
| Cow position: | chr24:6292232-6292741 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 14-512 |
| Cow position: | chr24:6287298-6287788 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 20-537 |
| Cow position: | chr24:6292836-6293336 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 210, 227 |
| Conread position: | 21-385 |
| Cow position: | chr24:6294088-6294449 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 150, 51 |
| Conread position: | 23-524 |
| Cow position: | chr24:6288164-6288657 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 63 |
| Conread position: | 35-499 |
| Cow position: | chr24:6287791-6288255 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 119, 33 |
| Conread position: | 42-313 |
| Cow position: | chr24:6284591-6284850 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 43-429 |
| Cow position: | chr24:6292456-6292843 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 227 |
| Conread position: | 51-499 |
| Cow position: | chr24:6285486-6285925 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 53-510 |
| Cow position: | chr24:6289889-6290346 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 80-416 |
| Cow position: | chr24:6289552-6289885 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 82-498 |
| Cow position: | chr24:6290966-6291379 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 157, 187 |
| Conread position: | 83-303 |
| Cow position: | chr24:6286341-6286541 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 177, 67 |
| Conread position: | 83-499 |
| Cow position: | chr24:6285345-6285734 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 67 |
| Conread position: | 90-470 |
| Cow position: | chr24:6283380-6283754 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 131 |
| Conread position: | 161-499 |
| Cow position: | chr24:6284507-6284842 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 198-426 |
| Cow position: | chr24:6293796-6294030 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 177 |
| Conread position: | 198-473 |
| Cow position: | chr24:6291937-6292209 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 163 |
Show alignments to all cow chromosomes.