Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003L15.5 |
| Conread position: | 272-500 |
| Cow position: | chr11:50472633-50472408 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 326-501 |
| Cow position: | chr11:41278452-41278276 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 345-496 |
| Cow position: | chr11:46998907-46998758 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 345-500 |
| Cow position: | chr11:53314152-53314298 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 364-500 |
| Cow position: | chr11:56288769-56288635 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 367-498 |
| Cow position: | chr11:33271653-33271521 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 368-498 |
| Cow position: | chr11:35801740-35801609 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 368-500 |
| Cow position: | chr11:84385415-84385547 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 368-501 |
| Cow position: | chr11:49192230-49192366 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 370-520 |
| Cow position: | chr11:62742426-62742584 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 372-501 |
| Cow position: | chr11:36136328-36136197 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 372-501 |
| Cow position: | chr11:36180661-36180538 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 375-488 |
| Cow position: | chr11:3740177-3740068 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 375-500 |
| Cow position: | chr11:32108471-32108598 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 375-501 |
| Cow position: | chr11:80695026-80695152 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-489 |
| Cow position: | chr11:56749010-56749118 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 381-497 |
| Cow position: | chr11:29677416-29677300 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-501 |
| Cow position: | chr11:1932179-1932060 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 382-517 |
| Cow position: | chr11:77013978-77013845 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 383-497 |
| Cow position: | chr11:21830005-21830117 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 383-500 |
| Cow position: | chr11:16315084-16314964 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 383-501 |
| Cow position: | chr11:12555093-12555215 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 383-501 |
| Cow position: | chr11:53817062-53816944 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-489 |
| Cow position: | chr11:6070994-6071099 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-500 |
| Cow position: | chr11:24551595-24551481 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 384-500 |
| Cow position: | chr11:87171870-87171985 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 384-501 |
| Cow position: | chr11:12080047-12079934 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 384-501 |
| Cow position: | chr11:15369595-15369478 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-501 |
| Cow position: | chr11:21590595-21590477 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 385-501 |
| Cow position: | chr11:30165717-30165600 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 386-500 |
| Cow position: | chr11:28092656-28092541 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 386-516 |
| Cow position: | chr11:21322301-21322429 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 387-501 |
| Cow position: | chr11:19591793-19591904 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 387-501 |
| Cow position: | chr11:67345457-67345570 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 388-499 |
| Cow position: | chr11:64607045-64607155 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 388-500 |
| Cow position: | chr11:13592940-13592827 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 389-498 |
| Cow position: | chr11:37099972-37100080 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 389-501 |
| Cow position: | chr11:21124407-21124520 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 389-501 |
| Cow position: | chr11:53888448-53888560 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-501 |
| Cow position: | chr11:72568262-72568377 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 391-496 |
| Cow position: | chr11:1091714-1091820 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 392-500 |
| Cow position: | chr11:68913341-68913233 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-501 |
| Cow position: | chr11:42084476-42084585 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 395-501 |
| Cow position: | chr11:44016443-44016334 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 395-501 |
| Cow position: | chr11:53773879-53773772 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 395-501 |
| Cow position: | chr11:55830030-55830138 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 395-501 |
| Cow position: | chr11:75479829-75479933 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 396-500 |
| Cow position: | chr11:64029073-64029177 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 400-499 |
| Cow position: | chr11:56901874-56901973 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-501 |
| Cow position: | chr11:17889544-17889638 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-501 |
| Cow position: | chr11:8828188-8828099 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 78 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-501 |
| Cow position: | chr11:33369330-33369241 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 79 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.