Cow genome map

Conread name: Ss1.1-Pig3-SRG8003O23.3

Conread position: 1-412
Cow position: chr11:49582612-49582186 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 93

Conread position: 529-714
Cow position: chr11:79018906-79019088 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 33, 129

Conread position: 532-717
Cow position: chr11:41293667-41293850 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 6

Conread position: 533-654
Cow position: chr11:34623319-34623197 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 533-657
Cow position: chr11:31326157-31326030 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 546-715
Cow position: chr11:16906915-16907079 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 111

Conread position: 546-715
Cow position: chr11:56290647-56290481 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 118

Conread position: 546-717
Cow position: chr11:26845459-26845626 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 56

Conread position: 546-717
Cow position: chr11:28644223-28644055 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 114

Conread position: 546-719
Cow position: chr11:69119430-69119259 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 115

Conread position: 546-720
Cow position: chr11:22747196-22747363 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 24

Conread position: 546-720
Cow position: chr11:36238908-36238745 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 546-720
Cow position: chr11:69076045-69075876 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 129, 0

Conread position: 546-726
Cow position: chr11:59702627-59702445 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 117

Conread position: 547-715
Cow position: chr11:19606711-19606547 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 16

Conread position: 548-726
Cow position: chr11:58173758-58173584 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 109

Conread position: 549-717
Cow position: chr11:27747056-27746891 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 33, 115

Conread position: 549-717
Cow position: chr11:44032145-44031973 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 549-717
Cow position: chr11:77319550-77319382 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 112

Conread position: 549-720
Cow position: chr11:82730867-82731033 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 549-729
Cow position: chr11:17227513-17227686 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 551-657
Cow position: chr11:31228094-31227986 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 551-717
Cow position: chr11:47772260-47772422 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 555-716
Cow position: chr11:48272325-48272169 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 556-715
Cow position: chr11:30955124-30954970 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 560-719
Cow position: chr11:11533811-11533962 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 562-712
Cow position: chr11:20205733-20205879 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 562-715
Cow position: chr11:62663116-62663262 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 106, 0

Conread position: 562-715
Cow position: chr11:68206721-68206874 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 103

Conread position: 562-717
Cow position: chr11:2917468-2917618 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 562-717
Cow position: chr11:11469528-11469680 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 98

Conread position: 562-719
Cow position: chr11:259051-259206 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 121

Conread position: 562-719
Cow position: chr11:30830493-30830648 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 99

Conread position: 562-726
Cow position: chr11:18447376-18447533 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 563-714
Cow position: chr11:55052991-55052842 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 98

Conread position: 563-717
Cow position: chr11:63998974-63999120 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 564-716
Cow position: chr11:30867300-30867152 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 95, 107

Conread position: 564-717
Cow position: chr11:897790-897641 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 6

Conread position: 564-720
Cow position: chr11:35213051-35213203 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 565-719
Cow position: chr11:42296504-42296654 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 566-717
Cow position: chr11:34646704-34646557 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 568-726
Cow position: chr11:51729399-51729245 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 91, 0

Conread position: 569-720
Cow position: chr11:15382391-15382538 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 569-720
Cow position: chr11:17721689-17721837 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 91

Conread position: 569-724
Cow position: chr11:11125774-11125624 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 570-717
Cow position: chr11:39499468-39499324 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 88

Conread position: 570-717
Cow position: chr11:40608484-40608626 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 570-724
Cow position: chr11:62150783-62150930 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 571-717
Cow position: chr11:31410768-31410910 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 571-717
Cow position: chr11:48296140-48296001 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 571-717
Cow position: chr11:62812840-62812982 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 573-715
Cow position: chr11:32690863-32691001 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 93, 84

Conread position: 573-727
Cow position: chr11:27248598-27248451 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 574-728
Cow position: chr11:21885939-21885790 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 576-714
Cow position: chr11:44636650-44636783 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 576-717
Cow position: chr11:29960400-29960266 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 577-720
Cow position: chr11:83230297-83230435 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 82, 0

Show alignments to all cow chromosomes.