Cow genome map
Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
Conread position: | 1-412 |
Cow position: | chr11:49582612-49582186 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 93 |
Conread position: | 529-714 |
Cow position: | chr11:79018906-79019088 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 139 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 33, 129 |
Conread position: | 532-717 |
Cow position: | chr11:41293667-41293850 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 141 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 28, 6 |
Conread position: | 533-654 |
Cow position: | chr11:34623319-34623197 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 96 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 533-657 |
Cow position: | chr11:31326157-31326030 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 99 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 546-715 |
Cow position: | chr11:16906915-16907079 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 123 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 22, 111 |
Conread position: | 546-715 |
Cow position: | chr11:56290647-56290481 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 128 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 16, 118 |
Conread position: | 546-717 |
Cow position: | chr11:26845459-26845626 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 125 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 16, 56 |
Conread position: | 546-717 |
Cow position: | chr11:28644223-28644055 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 123 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 16, 114 |
Conread position: | 546-719 |
Cow position: | chr11:69119430-69119259 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 134 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 24, 115 |
Conread position: | 546-720 |
Cow position: | chr11:22747196-22747363 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 134 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 16, 24 |
Conread position: | 546-720 |
Cow position: | chr11:36238908-36238745 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 127 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 546-720 |
Cow position: | chr11:69076045-69075876 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 126 |
Alignm E-value: | 9e-24 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 546-726 |
Cow position: | chr11:59702627-59702445 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 133 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 16, 117 |
Conread position: | 547-715 |
Cow position: | chr11:19606711-19606547 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 126 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 37, 16 |
Conread position: | 548-726 |
Cow position: | chr11:58173758-58173584 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 131 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 14, 109 |
Conread position: | 549-717 |
Cow position: | chr11:27747056-27746891 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 122 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 33, 115 |
Conread position: | 549-717 |
Cow position: | chr11:44032145-44031973 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 126 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 549-717 |
Cow position: | chr11:77319550-77319382 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 126 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 26, 112 |
Conread position: | 549-720 |
Cow position: | chr11:82730867-82731033 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 124 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 549-729 |
Cow position: | chr11:17227513-17227686 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 132 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 114, 0 |
Conread position: | 551-657 |
Cow position: | chr11:31228094-31227986 (view UCSC Genome Browser custom track) |
Alignm length: | 109 |
Alignm identity: | 88 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 551-717 |
Cow position: | chr11:47772260-47772422 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 122 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 106, 0 |
Conread position: | 555-716 |
Cow position: | chr11:48272325-48272169 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 117 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 556-715 |
Cow position: | chr11:30955124-30954970 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 117 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 560-719 |
Cow position: | chr11:11533811-11533962 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 119 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 56, 0 |
Conread position: | 562-712 |
Cow position: | chr11:20205733-20205879 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 110 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 95, 0 |
Conread position: | 562-715 |
Cow position: | chr11:62663116-62663262 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 116 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 106, 0 |
Conread position: | 562-715 |
Cow position: | chr11:68206721-68206874 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 114 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 20, 103 |
Conread position: | 562-717 |
Cow position: | chr11:2917468-2917618 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 119 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 562-717 |
Cow position: | chr11:11469528-11469680 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 117 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 27, 98 |
Conread position: | 562-719 |
Cow position: | chr11:259051-259206 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 120 |
Alignm E-value: | 9e-24 |
Alignm gaps (pig, cow): | 22, 121 |
Conread position: | 562-719 |
Cow position: | chr11:30830493-30830648 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 117 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 22, 99 |
Conread position: | 562-726 |
Cow position: | chr11:18447376-18447533 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 121 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 563-714 |
Cow position: | chr11:55052991-55052842 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 115 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 11, 98 |
Conread position: | 563-717 |
Cow position: | chr11:63998974-63999120 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 116 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 96, 0 |
Conread position: | 564-716 |
Cow position: | chr11:30867300-30867152 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 115 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 95, 107 |
Conread position: | 564-717 |
Cow position: | chr11:897790-897641 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 119 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 24, 6 |
Conread position: | 564-720 |
Cow position: | chr11:35213051-35213203 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 115 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 95, 0 |
Conread position: | 565-719 |
Cow position: | chr11:42296504-42296654 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 115 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 107, 0 |
Conread position: | 566-717 |
Cow position: | chr11:34646704-34646557 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 111 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 93, 0 |
Conread position: | 568-726 |
Cow position: | chr11:51729399-51729245 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 122 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 91, 0 |
Conread position: | 569-720 |
Cow position: | chr11:15382391-15382538 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 112 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 94, 0 |
Conread position: | 569-720 |
Cow position: | chr11:17721689-17721837 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 115 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 24, 91 |
Conread position: | 569-724 |
Cow position: | chr11:11125774-11125624 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 114 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 570-717 |
Cow position: | chr11:39499468-39499324 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 113 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 30, 88 |
Conread position: | 570-717 |
Cow position: | chr11:40608484-40608626 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 112 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 570-724 |
Cow position: | chr11:62150783-62150930 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 116 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 571-717 |
Cow position: | chr11:31410768-31410910 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 110 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 88, 0 |
Conread position: | 571-717 |
Cow position: | chr11:48296140-48296001 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 113 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 96, 0 |
Conread position: | 571-717 |
Cow position: | chr11:62812840-62812982 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 108 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 573-715 |
Cow position: | chr11:32690863-32691001 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 109 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 93, 84 |
Conread position: | 573-727 |
Cow position: | chr11:27248598-27248451 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 117 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 94, 0 |
Conread position: | 574-728 |
Cow position: | chr11:21885939-21885790 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 115 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 576-714 |
Cow position: | chr11:44636650-44636783 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 107 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 576-717 |
Cow position: | chr11:29960400-29960266 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 110 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 577-720 |
Cow position: | chr11:83230297-83230435 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 108 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.