Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
| Conread position: | 530-719 |
| Cow position: | chr16:3114705-3114523 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 533-709 |
| Cow position: | chr16:6378960-6379130 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 533-713 |
| Cow position: | chr16:20025603-20025434 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 533-714 |
| Cow position: | chr16:7550131-7549957 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 533-720 |
| Cow position: | chr16:46429980-46430166 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 539-717 |
| Cow position: | chr16:5257156-5256982 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 546-717 |
| Cow position: | chr16:496224-496390 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 546-723 |
| Cow position: | chr16:3634268-3634096 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 547-653 |
| Cow position: | chr16:20265412-20265517 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 549-717 |
| Cow position: | chr16:13689818-13689652 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 551-720 |
| Cow position: | chr16:9553207-9553042 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 553-715 |
| Cow position: | chr16:11390138-11390298 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 555-657 |
| Cow position: | chr16:33135082-33134979 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 562-714 |
| Cow position: | chr16:31484524-31484673 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 37 |
| Conread position: | 562-715 |
| Cow position: | chr16:26649490-26649641 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 562-717 |
| Cow position: | chr16:11134843-11134995 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 562-717 |
| Cow position: | chr16:33704944-33704794 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 562-717 |
| Cow position: | chr16:45139806-45139657 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 562-719 |
| Cow position: | chr16:32893761-32893612 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 562-719 |
| Cow position: | chr16:48095627-48095782 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 563-717 |
| Cow position: | chr16:25170526-25170379 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 563-719 |
| Cow position: | chr16:9985257-9985409 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 569-657 |
| Cow position: | chr16:21593961-21594049 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 569-715 |
| Cow position: | chr16:45785867-45785725 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 569-716 |
| Cow position: | chr16:45122165-45122022 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 569-717 |
| Cow position: | chr16:5364031-5363886 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 105 |
| Conread position: | 569-717 |
| Cow position: | chr16:17282788-17282649 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 569-717 |
| Cow position: | chr16:48340563-48340708 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 569-719 |
| Cow position: | chr16:17291891-17292038 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 569-719 |
| Cow position: | chr16:19644018-19643872 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 569-719 |
| Cow position: | chr16:21370060-21370203 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 569-719 |
| Cow position: | chr16:33054351-33054497 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-719 |
| Cow position: | chr16:33646144-33645999 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 569-720 |
| Cow position: | chr16:25839750-25839603 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-726 |
| Cow position: | chr16:4059485-4059333 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 569-799 |
| Cow position: | chr16:29527958-29527738 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 222, 35 |
| Conread position: | 570-717 |
| Cow position: | chr16:19003403-19003547 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 570-724 |
| Cow position: | chr16:40562360-40562211 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 570-726 |
| Cow position: | chr16:12010224-12010072 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 571-724 |
| Cow position: | chr16:54579294-54579146 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 572-717 |
| Cow position: | chr16:46433197-46433341 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 573-719 |
| Cow position: | chr16:45678105-45677962 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 574-709 |
| Cow position: | chr16:45554568-45554435 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 575-720 |
| Cow position: | chr16:33198315-33198454 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 576-717 |
| Cow position: | chr16:27728383-27728245 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 132, 100 |
| Conread position: | 576-717 |
| Cow position: | chr16:34753837-34753974 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 576-719 |
| Cow position: | chr16:40514359-40514498 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 577-717 |
| Cow position: | chr16:42977588-42977451 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 579-717 |
| Cow position: | chr16:34220306-34220172 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.