Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
| Conread position: | 519-654 |
| Cow position: | chr17:9117864-9117729 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 519-715 |
| Cow position: | chr17:5743069-5743263 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 523-717 |
| Cow position: | chr17:11478983-11478795 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 524-720 |
| Cow position: | chr17:28814276-28814470 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 137 |
| Conread position: | 539-720 |
| Cow position: | chr17:22032496-22032675 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 542-714 |
| Cow position: | chr17:9713144-9713313 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 546-717 |
| Cow position: | chr17:1410044-1410212 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 546-717 |
| Cow position: | chr17:15340558-15340728 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 546-720 |
| Cow position: | chr17:37430311-37430482 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 111 |
| Conread position: | 549-720 |
| Cow position: | chr17:32273496-32273665 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 550-719 |
| Cow position: | chr17:30728692-30728528 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 550-720 |
| Cow position: | chr17:5720062-5719894 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 551-716 |
| Cow position: | chr17:21114762-21114927 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 555-717 |
| Cow position: | chr17:21325518-21325358 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 557-720 |
| Cow position: | chr17:18766810-18766974 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 5, 130 |
| Conread position: | 562-717 |
| Cow position: | chr17:5372350-5372501 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 562-717 |
| Cow position: | chr17:11912323-11912477 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 562-717 |
| Cow position: | chr17:21039738-21039583 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 562-718 |
| Cow position: | chr17:24587805-24587649 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 562-720 |
| Cow position: | chr17:40852149-40851996 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 562-724 |
| Cow position: | chr17:12325588-12325746 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 562-724 |
| Cow position: | chr17:39606607-39606449 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 562-726 |
| Cow position: | chr17:6423936-6423781 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 563-717 |
| Cow position: | chr17:1634316-1634466 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 563-717 |
| Cow position: | chr17:7810578-7810729 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 563-717 |
| Cow position: | chr17:32418936-32419090 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 563-719 |
| Cow position: | chr17:5768080-5767931 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 563-719 |
| Cow position: | chr17:25616423-25616274 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 563-720 |
| Cow position: | chr17:32332916-32333068 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 566-726 |
| Cow position: | chr17:29157589-29157436 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 569-716 |
| Cow position: | chr17:32138255-32138397 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 569-716 |
| Cow position: | chr17:40276910-40276767 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 569-717 |
| Cow position: | chr17:24554167-24554022 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 569-718 |
| Cow position: | chr17:11664412-11664560 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 569-720 |
| Cow position: | chr17:9911927-9911783 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 569-720 |
| Cow position: | chr17:11831945-11832092 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 569-720 |
| Cow position: | chr17:24883401-24883548 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 569-724 |
| Cow position: | chr17:25800713-25800863 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 569-817 |
| Cow position: | chr17:31037207-31037447 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 217, 94 |
| Conread position: | 570-717 |
| Cow position: | chr17:25612259-25612116 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 571-716 |
| Cow position: | chr17:7959348-7959207 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 571-716 |
| Cow position: | chr17:32989644-32989504 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 571-717 |
| Cow position: | chr17:17035117-17034975 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 571-717 |
| Cow position: | chr17:32993456-32993597 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 572-724 |
| Cow position: | chr17:33793330-33793185 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 574-717 |
| Cow position: | chr17:20990025-20990166 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 83 |
Show alignments to all cow chromosomes.