Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
| Conread position: | 524-717 |
| Cow position: | chr2:9369744-9369939 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 530-657 |
| Cow position: | chr2:41385724-41385852 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 119 |
| Conread position: | 533-727 |
| Cow position: | chr2:32416693-32416885 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 539-720 |
| Cow position: | chr2:30642501-30642680 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 545-717 |
| Cow position: | chr2:63074700-63074866 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 546-657 |
| Cow position: | chr2:44032247-44032361 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 546-717 |
| Cow position: | chr2:53851589-53851423 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 546-719 |
| Cow position: | chr2:47624255-47624422 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 546-720 |
| Cow position: | chr2:39798396-39798225 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 547-715 |
| Cow position: | chr2:44191632-44191468 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 547-715 |
| Cow position: | chr2:45721118-45721279 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 547-717 |
| Cow position: | chr2:72309860-72310025 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 547-719 |
| Cow position: | chr2:24434129-24434295 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 547-719 |
| Cow position: | chr2:42927298-42927466 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 547-719 |
| Cow position: | chr2:83184305-83184138 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 547-720 |
| Cow position: | chr2:1638757-1638587 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 547-724 |
| Cow position: | chr2:39263638-39263468 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 170, 16 |
| Conread position: | 550-714 |
| Cow position: | chr2:18621568-18621399 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 552-720 |
| Cow position: | chr2:64773532-64773368 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 552-720 |
| Cow position: | chr2:69747470-69747633 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 553-717 |
| Cow position: | chr2:15377248-15377091 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 554-720 |
| Cow position: | chr2:72183345-72183509 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 107 |
| Conread position: | 555-719 |
| Cow position: | chr2:68487861-68488020 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 560-720 |
| Cow position: | chr2:40402888-40403044 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 561-710 |
| Cow position: | chr2:6160207-6160350 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 561-716 |
| Cow position: | chr2:5604660-5604512 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 562-657 |
| Cow position: | chr2:29860138-29860044 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 562-661 |
| Cow position: | chr2:35208051-35207953 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 562-715 |
| Cow position: | chr2:10439973-10439827 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 562-715 |
| Cow position: | chr2:24530505-24530356 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 562-715 |
| Cow position: | chr2:41248707-41248559 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 562-716 |
| Cow position: | chr2:43995075-43994922 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 562-717 |
| Cow position: | chr2:13672657-13672510 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 562-717 |
| Cow position: | chr2:18997858-18997706 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 562-717 |
| Cow position: | chr2:39501178-39501018 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 562-717 |
| Cow position: | chr2:46162096-46161943 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 12, 103 |
| Conread position: | 562-717 |
| Cow position: | chr2:53491314-53491465 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 562-717 |
| Cow position: | chr2:70704397-70704244 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 562-718 |
| Cow position: | chr2:1073656-1073505 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 562-718 |
| Cow position: | chr2:43624398-43624549 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 562-719 |
| Cow position: | chr2:17966890-17967043 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 562-719 |
| Cow position: | chr2:33554035-33554186 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 562-720 |
| Cow position: | chr2:21049193-21049344 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 562-720 |
| Cow position: | chr2:38640460-38640306 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 562-720 |
| Cow position: | chr2:39584587-39584432 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 562-720 |
| Cow position: | chr2:42255572-42255418 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 562-720 |
| Cow position: | chr2:45499065-45499219 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 562-727 |
| Cow position: | chr2:45478460-45478621 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 563-715 |
| Cow position: | chr2:1335559-1335707 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 563-720 |
| Cow position: | chr2:40257276-40257429 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 566-726 |
| Cow position: | chr2:44222957-44222801 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 569-713 |
| Cow position: | chr2:46120512-46120650 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 569-715 |
| Cow position: | chr2:8821362-8821220 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 569-717 |
| Cow position: | chr2:994235-994379 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-717 |
| Cow position: | chr2:21410350-21410205 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 95 |
| Conread position: | 569-717 |
| Cow position: | chr2:45542269-45542413 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-717 |
| Cow position: | chr2:56325431-56325577 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 108 |
| Conread position: | 569-719 |
| Cow position: | chr2:54810726-54810868 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 569-719 |
| Cow position: | chr2:69350435-69350581 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 569-720 |
| Cow position: | chr2:19137760-19137907 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-720 |
| Cow position: | chr2:37619785-37619931 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 569-727 |
| Cow position: | chr2:80275164-80275317 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 570-715 |
| Cow position: | chr2:40880197-40880059 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 571-717 |
| Cow position: | chr2:19494343-19494200 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 571-717 |
| Cow position: | chr2:44051435-44051297 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 571-719 |
| Cow position: | chr2:46188968-46189112 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 571-720 |
| Cow position: | chr2:71621920-71622064 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 572-717 |
| Cow position: | chr2:45784866-45784723 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 573-719 |
| Cow position: | chr2:71437249-71437394 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 574-717 |
| Cow position: | chr2:43591248-43591387 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 576-715 |
| Cow position: | chr2:53500912-53501047 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 576-717 |
| Cow position: | chr2:38362243-38362379 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 576-717 |
| Cow position: | chr2:54971302-54971162 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 87 |
| Conread position: | 576-718 |
| Cow position: | chr2:40466758-40466620 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 576-719 |
| Cow position: | chr2:46164378-46164516 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 578-717 |
| Cow position: | chr2:84480380-84480515 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 578-795 |
| Cow position: | chr2:17444918-17444704 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 150, 22 |
| Conread position: | 579-717 |
| Cow position: | chr2:75227323-75227187 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 586-717 |
| Cow position: | chr2:7573392-7573518 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.