Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
| Conread position: | 511-657 |
| Cow position: | chr21:652326-652472 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 532-717 |
| Cow position: | chr21:36682555-36682374 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 533-713 |
| Cow position: | chr21:27568943-27569116 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 533-717 |
| Cow position: | chr21:27624927-27624747 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 534-725 |
| Cow position: | chr21:19359948-19360135 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 536-720 |
| Cow position: | chr21:13365572-13365389 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 544-717 |
| Cow position: | chr21:11057662-11057829 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 546-717 |
| Cow position: | chr21:18800317-18800490 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 546-720 |
| Cow position: | chr21:396084-395914 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 129 |
| Conread position: | 546-720 |
| Cow position: | chr21:36795820-36795649 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 547-717 |
| Cow position: | chr21:12801537-12801700 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 547-717 |
| Cow position: | chr21:30980364-30980528 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 547-720 |
| Cow position: | chr21:28924324-28924155 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 548-715 |
| Cow position: | chr21:14228068-14228229 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 551-713 |
| Cow position: | chr21:33930-33772 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 554-715 |
| Cow position: | chr21:33350948-33350792 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 555-717 |
| Cow position: | chr21:29485184-29485031 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 561-719 |
| Cow position: | chr21:30222548-30222392 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 100 |
| Conread position: | 562-712 |
| Cow position: | chr21:15012639-15012493 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 562-717 |
| Cow position: | chr21:802119-802268 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 562-720 |
| Cow position: | chr21:7768640-7768484 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 562-720 |
| Cow position: | chr21:41287591-41287747 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 562-720 |
| Cow position: | chr21:47464914-47465072 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 562-727 |
| Cow position: | chr21:33982609-33982768 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 563-715 |
| Cow position: | chr21:32339541-32339689 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 566-726 |
| Cow position: | chr21:5392341-5392496 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 569-719 |
| Cow position: | chr21:641780-641634 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 571-719 |
| Cow position: | chr21:24875544-24875399 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 573-715 |
| Cow position: | chr21:643513-643375 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 576-717 |
| Cow position: | chr21:28030474-28030338 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 576-720 |
| Cow position: | chr21:71773-71633 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 577-726 |
| Cow position: | chr21:41046991-41046847 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 579-715 |
| Cow position: | chr21:19868772-19868904 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 579-719 |
| Cow position: | chr21:29069143-29069280 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 581-717 |
| Cow position: | chr21:38121282-38121150 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.