Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
| Conread position: | 1-110 |
| Cow position: | chr3:26660294-26660187 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 519-717 |
| Cow position: | chr3:17447462-17447651 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 529-657 |
| Cow position: | chr3:27670560-27670430 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 532-727 |
| Cow position: | chr3:53508752-53508562 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 533-724 |
| Cow position: | chr3:26874735-26874550 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 533-726 |
| Cow position: | chr3:12711774-12711963 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 538-717 |
| Cow position: | chr3:3316684-3316854 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 546-656 |
| Cow position: | chr3:20719181-20719292 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 546-710 |
| Cow position: | chr3:24372049-24371890 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 546-717 |
| Cow position: | chr3:44330308-44330476 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 546-719 |
| Cow position: | chr3:82629444-82629275 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 547-717 |
| Cow position: | chr3:15506575-15506410 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 549-717 |
| Cow position: | chr3:80072253-80072090 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 551-726 |
| Cow position: | chr3:13507590-13507420 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 552-730 |
| Cow position: | chr3:59920151-59919980 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 109 |
| Conread position: | 553-714 |
| Cow position: | chr3:55984220-55984063 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 553-715 |
| Cow position: | chr3:5305917-5305761 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 554-719 |
| Cow position: | chr3:26603435-26603596 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 554-719 |
| Cow position: | chr3:55271922-55272086 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 561-717 |
| Cow position: | chr3:23132056-23132208 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 561-717 |
| Cow position: | chr3:41652490-41652337 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 562-712 |
| Cow position: | chr3:22924263-22924409 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 109 |
| Conread position: | 562-715 |
| Cow position: | chr3:55177634-55177783 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 562-715 |
| Cow position: | chr3:80565081-80564930 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 562-717 |
| Cow position: | chr3:82123433-82123587 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 562-719 |
| Cow position: | chr3:23408246-23408397 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 562-719 |
| Cow position: | chr3:68616218-68616364 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 563-715 |
| Cow position: | chr3:70762011-70762157 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 563-717 |
| Cow position: | chr3:20677733-20677878 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 563-726 |
| Cow position: | chr3:6182116-6182269 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 569-709 |
| Cow position: | chr3:20021374-20021238 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 569-717 |
| Cow position: | chr3:16752154-16752297 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 569-717 |
| Cow position: | chr3:22165311-22165454 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 569-719 |
| Cow position: | chr3:4481047-4480902 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-720 |
| Cow position: | chr3:45882003-45881856 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 569-720 |
| Cow position: | chr3:67704651-67704504 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 570-717 |
| Cow position: | chr3:60264612-60264755 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 570-719 |
| Cow position: | chr3:54506813-54506666 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 571-666 |
| Cow position: | chr3:8523052-8523146 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 571-717 |
| Cow position: | chr3:9120945-9120806 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 571-717 |
| Cow position: | chr3:38100246-38100102 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 88 |
| Conread position: | 571-720 |
| Cow position: | chr3:59604946-59604804 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 572-726 |
| Cow position: | chr3:61224640-61224792 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 573-724 |
| Cow position: | chr3:56059912-56059765 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 574-720 |
| Cow position: | chr3:56476782-56476640 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 576-718 |
| Cow position: | chr3:44960907-44961044 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 577-717 |
| Cow position: | chr3:52608279-52608143 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 578-719 |
| Cow position: | chr3:73461062-73460926 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 580-719 |
| Cow position: | chr3:53150425-53150284 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 581-717 |
| Cow position: | chr3:68156816-68156683 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 82 |
| Conread position: | 584-717 |
| Cow position: | chr3:51349913-51349784 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.