Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8003O23.3 |
| Conread position: | 529-657 |
| Cow position: | chr5:1090624-1090755 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 532-717 |
| Cow position: | chr5:35647536-35647354 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 125 |
| Conread position: | 534-720 |
| Cow position: | chr5:30949725-30949907 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 539-720 |
| Cow position: | chr5:49341862-49342041 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 546-656 |
| Cow position: | chr5:14354256-14354143 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 546-715 |
| Cow position: | chr5:43992501-43992337 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 546-715 |
| Cow position: | chr5:54060455-54060291 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 547-719 |
| Cow position: | chr5:43929558-43929726 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 549-714 |
| Cow position: | chr5:4709978-4710137 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 549-714 |
| Cow position: | chr5:12434716-12434557 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 549-720 |
| Cow position: | chr5:55795789-55795959 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 561-717 |
| Cow position: | chr5:17602042-17602189 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 562-655 |
| Cow position: | chr5:29599384-29599477 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 562-715 |
| Cow position: | chr5:49474386-49474532 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 562-717 |
| Cow position: | chr5:22242604-22242761 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 562-717 |
| Cow position: | chr5:26548975-26549129 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 562-717 |
| Cow position: | chr5:30276854-30276701 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 562-719 |
| Cow position: | chr5:21617623-21617467 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 562-719 |
| Cow position: | chr5:60183968-60183812 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 562-719 |
| Cow position: | chr5:60523895-60523742 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 562-720 |
| Cow position: | chr5:56028377-56028531 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 562-720 |
| Cow position: | chr5:57686573-57686729 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 562-724 |
| Cow position: | chr5:37646380-37646539 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 563-715 |
| Cow position: | chr5:41165249-41165101 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 563-717 |
| Cow position: | chr5:34914888-34915042 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 104 |
| Conread position: | 564-719 |
| Cow position: | chr5:64175964-64176117 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 566-720 |
| Cow position: | chr5:24069545-24069398 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 566-726 |
| Cow position: | chr5:64591937-64592093 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 566-727 |
| Cow position: | chr5:30253899-30253742 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 566-729 |
| Cow position: | chr5:59627258-59627099 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 569-710 |
| Cow position: | chr5:54312756-54312619 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 569-717 |
| Cow position: | chr5:30629002-30629148 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 569-719 |
| Cow position: | chr5:64026864-64027010 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 569-723 |
| Cow position: | chr5:55942224-55942375 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 149, 90 |
| Conread position: | 569-727 |
| Cow position: | chr5:22795369-22795218 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 571-717 |
| Cow position: | chr5:65941098-65941239 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 571-717 |
| Cow position: | chr5:66551743-66551886 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 571-719 |
| Cow position: | chr5:45845535-45845682 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 571-726 |
| Cow position: | chr5:60948285-60948135 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 572-717 |
| Cow position: | chr5:40109644-40109504 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 574-717 |
| Cow position: | chr5:25035108-25035243 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 576-717 |
| Cow position: | chr5:44446717-44446855 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 81 |
| Conread position: | 577-715 |
| Cow position: | chr5:35982588-35982725 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 577-727 |
| Cow position: | chr5:69636371-69636223 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 144, 80 |
| Conread position: | 581-720 |
| Cow position: | chr5:9233845-9233981 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 83 |
Show alignments to all cow chromosomes.