Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 309-814 |
| Cow position: | chr13:22124991-22125502 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 111 |
| Conread position: | 374-760 |
| Cow position: | chr13:24162620-24163006 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 203, 197 |
| Conread position: | 379-773 |
| Cow position: | chr13:39930618-39931012 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 80 |
| Conread position: | 379-780 |
| Cow position: | chr13:22125235-22125636 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-780 |
| Cow position: | chr13:24162961-24163362 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 335, 345 |
| Conread position: | 379-813 |
| Cow position: | chr13:22124986-22125417 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 115, 20 |
| Conread position: | 379-813 |
| Cow position: | chr13:24162709-24163143 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 115, 108 |
| Conread position: | 379-814 |
| Cow position: | chr13:24162877-24163312 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 80 |
| Conread position: | 379-833 |
| Cow position: | chr13:39930702-39931156 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 80 |
| Conread position: | 382-709 |
| Cow position: | chr13:56292141-56291813 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 234, 243 |
| Conread position: | 387-701 |
| Cow position: | chr13:39984550-39984864 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 123, 130 |
| Conread position: | 387-751 |
| Cow position: | chr13:56333694-56334058 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-783 |
| Cow position: | chr13:39984298-39984694 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 238, 230 |
| Conread position: | 387-784 |
| Cow position: | chr13:39984466-39984863 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-784 |
| Cow position: | chr13:56333862-56334268 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 387-814 |
| Cow position: | chr13:39984046-39984473 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-864 |
| Cow position: | chr13:39984130-39984610 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 239, 230 |
| Conread position: | 391-831 |
| Cow position: | chr13:24162553-24162992 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 433, 0 |
| Conread position: | 397-653 |
| Cow position: | chr13:39984644-39984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-827 |
| Cow position: | chr13:24163071-24163493 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-831 |
| Cow position: | chr13:22124841-22125266 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 405-836 |
| Cow position: | chr13:22125345-22125778 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 326, 321 |
| Conread position: | 406-814 |
| Cow position: | chr13:24162818-24163228 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 393 |
| Conread position: | 407-814 |
| Cow position: | chr13:56292198-56291792 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 408-780 |
| Cow position: | chr13:56333631-56334003 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 298, 291 |
| Conread position: | 409-751 |
| Cow position: | chr13:39984236-39984578 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 306, 296 |
| Conread position: | 420-780 |
| Cow position: | chr13:39983911-39984271 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-784 |
| Cow position: | chr13:39983995-39984359 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-760 |
| Cow position: | chr13:22124943-22125280 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 154, 148 |
| Conread position: | 428-814 |
| Cow position: | chr13:56292426-56292045 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 207 |
| Conread position: | 429-773 |
| Cow position: | chr13:39930584-39930928 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 202, 194 |
| Conread position: | 432-814 |
| Cow position: | chr13:24162510-24162892 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 291, 285 |
| Conread position: | 457-814 |
| Cow position: | chr13:22125230-22125586 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 471-700 |
| Cow position: | chr13:56317930-56318159 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 471-814 |
| Cow position: | chr13:22124823-22125166 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 252, 248 |
| Conread position: | 504-773 |
| Cow position: | chr13:39930575-39930844 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 127, 119 |
| Conread position: | 504-871 |
| Cow position: | chr13:22124688-22125058 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 504-884 |
| Cow position: | chr13:24162414-24162797 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 52, 48 |
Show alignments to all cow chromosomes.