Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 381-784 |
| Cow position: | chr17:22552625-22552222 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 259 |
| Conread position: | 381-814 |
| Cow position: | chr17:22552289-22551856 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 92 |
| Conread position: | 382-690 |
| Cow position: | chr17:22451985-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 154, 168 |
| Conread position: | 384-814 |
| Cow position: | chr17:22551950-22551520 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-836 |
| Cow position: | chr17:22552034-22551581 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 441 |
| Conread position: | 384-864 |
| Cow position: | chr17:22452319-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 340 |
| Conread position: | 384-870 |
| Cow position: | chr17:22552958-22552469 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 172 |
| Conread position: | 385-814 |
| Cow position: | chr17:22552873-22552444 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-709 |
| Cow position: | chr17:22452065-22451742 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-814 |
| Cow position: | chr17:22552452-22552024 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 232 |
| Conread position: | 387-800 |
| Cow position: | chr17:22589617-22589204 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 253 |
| Conread position: | 387-814 |
| Cow position: | chr17:22552535-22552108 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 387-815 |
| Cow position: | chr17:22499330-22498902 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 315 |
| Conread position: | 387-824 |
| Cow position: | chr17:22552367-22551928 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 253 |
| Conread position: | 387-830 |
| Cow position: | chr17:22473483-22473928 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 387-834 |
| Cow position: | chr17:22552115-22551667 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 0 |
| Conread position: | 387-835 |
| Cow position: | chr17:22499078-22498628 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 427, 0 |
| Conread position: | 391-814 |
| Cow position: | chr17:22589865-22589442 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 159 |
| Conread position: | 391-873 |
| Cow position: | chr17:22452228-22451743 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 249 |
| Conread position: | 397-784 |
| Cow position: | chr17:22473409-22473796 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-836 |
| Cow position: | chr17:22590026-22589587 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 427 |
| Conread position: | 398-873 |
| Cow position: | chr17:41441047-41440569 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 174, 181 |
| Conread position: | 403-602 |
| Cow position: | chr17:22551681-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 403-676 |
| Cow position: | chr17:22551763-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-778 |
| Cow position: | chr17:22589685-22589310 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 295, 321 |
| Conread position: | 403-780 |
| Cow position: | chr17:22552771-22552394 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 153 |
| Conread position: | 403-799 |
| Cow position: | chr17:22590189-22589793 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 147 |
| Conread position: | 403-802 |
| Cow position: | chr17:22589937-22589538 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-832 |
| Cow position: | chr17:22499230-22498799 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 0 |
| Conread position: | 403-835 |
| Cow position: | chr17:22552687-22552253 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 273 |
| Conread position: | 403-836 |
| Cow position: | chr17:22553107-22552673 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 405-812 |
| Cow position: | chr17:41440788-41440381 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-835 |
| Cow position: | chr17:41440620-41440188 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 328, 321 |
| Conread position: | 405-845 |
| Cow position: | chr17:22499144-22498702 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 398, 0 |
| Conread position: | 405-877 |
| Cow position: | chr17:41440956-41440481 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 418, 0 |
| Conread position: | 406-669 |
| Cow position: | chr17:22498808-22498544 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 406-838 |
| Cow position: | chr17:44467440-44467874 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 408, 427 |
| Conread position: | 409-814 |
| Cow position: | chr17:22498972-22498567 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-835 |
| Cow position: | chr17:22473337-22473765 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 384, 376 |
| Conread position: | 417-783 |
| Cow position: | chr17:22473261-22473627 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 223, 200 |
| Conread position: | 418-783 |
| Cow position: | chr17:41441111-41440746 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 418-877 |
| Cow position: | chr17:41440859-41440397 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 183, 176 |
| Conread position: | 420-751 |
| Cow position: | chr17:22498877-22498546 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-780 |
| Cow position: | chr17:22553173-22552814 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-781 |
| Cow position: | chr17:22589751-22589391 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 422-836 |
| Cow position: | chr17:22499379-22498964 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 0 |
| Conread position: | 423-814 |
| Cow position: | chr17:22552163-22551772 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 133 |
| Conread position: | 423-836 |
| Cow position: | chr17:22590085-22589671 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 402 |
| Conread position: | 429-755 |
| Cow position: | chr17:44468051-44468377 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-814 |
| Cow position: | chr17:22590247-22589862 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-870 |
| Cow position: | chr17:22452358-22451914 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 430 |
| Conread position: | 430-814 |
| Cow position: | chr17:22552996-22552612 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 210 |
| Conread position: | 432-780 |
| Cow position: | chr17:41440677-41440329 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-784 |
| Cow position: | chr17:44467892-44468238 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-790 |
| Cow position: | chr17:44467976-44468328 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-865 |
| Cow position: | chr17:44467640-44468070 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 189, 193 |
| Conread position: | 456-814 |
| Cow position: | chr17:22590304-22589946 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 459-814 |
| Cow position: | chr17:22452412-22452057 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-787 |
| Cow position: | chr17:44467841-44468157 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 231, 237 |
| Conread position: | 479-814 |
| Cow position: | chr17:22473242-22473574 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 150, 21 |
| Conread position: | 492-783 |
| Cow position: | chr17:44467442-44467733 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-830 |
| Cow position: | chr17:22499393-22499054 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 324, 330 |
| Conread position: | 495-876 |
| Cow position: | chr17:41441118-41440734 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 310, 300 |
| Conread position: | 507-869 |
| Cow position: | chr17:44467373-44467738 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 571-787 |
| Cow position: | chr17:44467353-44467569 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 5 |
Show alignments to all cow chromosomes.