Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 17-918 |
| Cow position: | chr19:14948855-14947951 (view UCSC Genome Browser custom track) |
| Alignm length: | 906 |
| Alignm identity: | 753 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 452 |
| Conread position: | 300-700 |
| Cow position: | chr19:14959268-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 309-780 |
| Cow position: | chr19:23649452-23649929 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 357-836 |
| Cow position: | chr19:14940522-14941008 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 200 |
| Conread position: | 379-835 |
| Cow position: | chr19:14940214-14940672 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 297 |
| Conread position: | 383-835 |
| Cow position: | chr19:20678013-20678467 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 383-870 |
| Cow position: | chr19:23649616-23650106 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 0 |
| Conread position: | 386-613 |
| Cow position: | chr19:20678436-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-646 |
| Cow position: | chr19:14940809-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-664 |
| Cow position: | chr19:14959587-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-697 |
| Cow position: | chr19:20678353-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 240, 253 |
| Conread position: | 387-778 |
| Cow position: | chr19:23613750-23614141 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-778 |
| Cow position: | chr19:23614002-23614393 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-784 |
| Cow position: | chr19:20677513-20677910 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 244 |
| Conread position: | 387-813 |
| Cow position: | chr19:23613414-23613840 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 387-833 |
| Cow position: | chr19:23649872-23650321 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 387-834 |
| Cow position: | chr19:14960241-14959795 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 81 |
| Conread position: | 387-835 |
| Cow position: | chr19:14940306-14940756 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 332 |
| Conread position: | 387-835 |
| Cow position: | chr19:20635483-20635033 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 0 |
| Conread position: | 387-835 |
| Cow position: | chr19:23597263-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 435 |
| Conread position: | 387-836 |
| Cow position: | chr19:23613498-23613949 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 409 |
| Conread position: | 387-836 |
| Cow position: | chr19:43570242-43569792 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 422 |
| Conread position: | 387-869 |
| Cow position: | chr19:14960325-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 172 |
| Conread position: | 391-709 |
| Cow position: | chr19:14940730-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 391-800 |
| Cow position: | chr19:23614426-23614835 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 322 |
| Conread position: | 392-784 |
| Cow position: | chr19:20635646-20635254 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 248, 225 |
| Conread position: | 397-682 |
| Cow position: | chr19:20635305-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 398-644 |
| Cow position: | chr19:23650219-23650465 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 398-832 |
| Cow position: | chr19:14959249-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 131 |
| Conread position: | 399-873 |
| Cow position: | chr19:23614516-23614995 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 135 |
| Conread position: | 403-780 |
| Cow position: | chr19:20677695-20678074 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 403-783 |
| Cow position: | chr19:20677613-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-783 |
| Cow position: | chr19:20677949-20678329 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 403-814 |
| Cow position: | chr19:23614186-23614597 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-824 |
| Cow position: | chr19:23649468-23649891 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 228 |
| Conread position: | 403-835 |
| Cow position: | chr19:23649804-23650238 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 147 |
| Conread position: | 405-748 |
| Cow position: | chr19:14959654-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 405-812 |
| Cow position: | chr19:23650058-23650465 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 226 |
| Conread position: | 405-836 |
| Cow position: | chr19:43570140-43569709 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 213 |
| Conread position: | 405-873 |
| Cow position: | chr19:14939987-14940459 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 133 |
| Conread position: | 406-780 |
| Cow position: | chr19:20678287-20678662 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 406-784 |
| Cow position: | chr19:20677867-20678246 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 146 |
| Conread position: | 407-787 |
| Cow position: | chr19:20677363-20677745 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 235 |
| Conread position: | 407-835 |
| Cow position: | chr19:14940408-14940839 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 228 |
| Conread position: | 408-780 |
| Cow position: | chr19:20635713-20635342 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 408-783 |
| Cow position: | chr19:43570460-43570098 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 408-814 |
| Cow position: | chr19:14960388-14959984 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 408-868 |
| Cow position: | chr19:23596867-23597327 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 166 |
| Conread position: | 409-780 |
| Cow position: | chr19:20678123-20678494 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-813 |
| Cow position: | chr19:23649390-23649794 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-835 |
| Cow position: | chr19:23613604-23614032 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 147 |
| Conread position: | 419-870 |
| Cow position: | chr19:14940086-14940540 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 338 |
| Conread position: | 420-794 |
| Cow position: | chr19:20678218-20678592 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 115 |
| Conread position: | 420-830 |
| Cow position: | chr19:14960126-14959716 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 313 |
| Conread position: | 420-835 |
| Cow position: | chr19:23597212-23597629 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 0 |
| Conread position: | 420-890 |
| Cow position: | chr19:23597044-23597516 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 197 |
| Conread position: | 421-748 |
| Cow position: | chr19:23614792-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 421-793 |
| Cow position: | chr19:23614708-23615080 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 118, 111 |
| Conread position: | 421-814 |
| Cow position: | chr19:23614120-23614513 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 127, 115 |
| Conread position: | 421-835 |
| Cow position: | chr19:23613700-23614116 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 386, 375 |
| Conread position: | 421-835 |
| Cow position: | chr19:23614624-23615040 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 198 |
| Conread position: | 421-836 |
| Cow position: | chr19:23613868-23614284 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 408 |
| Conread position: | 426-824 |
| Cow position: | chr19:14959714-14959316 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 63 |
| Conread position: | 428-824 |
| Cow position: | chr19:23613959-23614357 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 379, 370 |
| Conread position: | 428-836 |
| Cow position: | chr19:23614295-23614705 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 111, 122 |
| Conread position: | 429-769 |
| Cow position: | chr19:14940516-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 120 |
| Conread position: | 429-814 |
| Cow position: | chr19:14940180-14940565 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 244 |
| Conread position: | 429-815 |
| Cow position: | chr19:14940684-14941070 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 290 |
| Conread position: | 429-832 |
| Cow position: | chr19:43570358-43569963 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 201, 80 |
| Conread position: | 429-865 |
| Cow position: | chr19:20677471-20677910 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 429-890 |
| Cow position: | chr19:14959302-14958845 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 387, 183 |
| Conread position: | 431-738 |
| Cow position: | chr19:23650168-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 113, 119 |
| Conread position: | 431-812 |
| Cow position: | chr19:23613374-23613755 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 186 |
| Conread position: | 431-835 |
| Cow position: | chr19:23650000-23650406 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 394 |
| Conread position: | 432-833 |
| Cow position: | chr19:14960448-14960047 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 244 |
| Conread position: | 432-870 |
| Cow position: | chr19:23649329-23649770 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 380, 0 |
| Conread position: | 443-814 |
| Cow position: | chr19:14939942-14940313 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 460-864 |
| Cow position: | chr19:23596834-23597239 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 471-700 |
| Cow position: | chr19:14916029-14916256 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 471-778 |
| Cow position: | chr19:23614422-23614729 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 471-841 |
| Cow position: | chr19:23649284-23649655 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 352, 0 |
| Conread position: | 482-830 |
| Cow position: | chr19:14915955-14916301 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 490-835 |
| Cow position: | chr19:14960472-14960129 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 491-835 |
| Cow position: | chr19:23613350-23613696 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 325, 0 |
Show alignments to all cow chromosomes.