Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 307-778 |
| Cow position: | chr2:86464992-86465469 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 148 |
| Conread position: | 307-814 |
| Cow position: | chr2:82799756-82800269 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 418 |
| Conread position: | 373-607 |
| Cow position: | chr2:78756138-78756370 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 379-814 |
| Cow position: | chr2:82800002-82800437 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 236 |
| Conread position: | 385-793 |
| Cow position: | chr2:86465412-86465820 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 242, 231 |
| Conread position: | 385-814 |
| Cow position: | chr2:78754490-78754903 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 141, 156 |
| Conread position: | 387-785 |
| Cow position: | chr2:78755232-78755628 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 147, 105 |
| Conread position: | 387-814 |
| Cow position: | chr2:78754660-78755071 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 231, 31 |
| Conread position: | 387-833 |
| Cow position: | chr2:78754896-78755344 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 0 |
| Conread position: | 387-833 |
| Cow position: | chr2:82799674-82800122 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 387-836 |
| Cow position: | chr2:78755566-78756014 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 157, 99 |
| Conread position: | 387-838 |
| Cow position: | chr2:82799590-82800043 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 0 |
| Conread position: | 392-814 |
| Cow position: | chr2:78755905-78756326 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 135, 209 |
| Conread position: | 397-780 |
| Cow position: | chr2:78755409-78755789 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 224, 104 |
| Conread position: | 398-789 |
| Cow position: | chr2:78754823-78755214 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 311 |
| Conread position: | 403-706 |
| Cow position: | chr2:48689378-48689075 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 221, 233 |
| Conread position: | 403-773 |
| Cow position: | chr2:5875018-5874648 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 403-784 |
| Cow position: | chr2:86465598-86465979 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 165, 155 |
| Conread position: | 405-738 |
| Cow position: | chr2:82800113-82800445 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 194, 13 |
| Conread position: | 405-747 |
| Cow position: | chr2:86465516-86465858 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 242, 213 |
| Conread position: | 405-794 |
| Cow position: | chr2:86465180-86465569 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-833 |
| Cow position: | chr2:82799944-82800374 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 0 |
| Conread position: | 407-776 |
| Cow position: | chr2:86465938-86466305 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 155, 151 |
| Conread position: | 407-780 |
| Cow position: | chr2:78754260-78754633 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 8, 182 |
| Conread position: | 409-778 |
| Cow position: | chr2:5875180-5874810 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 283, 292 |
| Conread position: | 415-814 |
| Cow position: | chr2:82799450-82799849 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-775 |
| Cow position: | chr2:86465278-86465634 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 295, 303 |
| Conread position: | 420-691 |
| Cow position: | chr2:78756102-78756370 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 420-701 |
| Cow position: | chr2:78754191-78754470 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 420-799 |
| Cow position: | chr2:78754441-78754816 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 278, 246 |
| Conread position: | 421-799 |
| Cow position: | chr2:48689443-48689066 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 295, 30 |
| Conread position: | 423-772 |
| Cow position: | chr2:5874746-5874397 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 428-836 |
| Cow position: | chr2:78754118-78754523 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 295, 49 |
| Conread position: | 428-873 |
| Cow position: | chr2:82799547-82799995 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 407 |
| Conread position: | 459-865 |
| Cow position: | chr2:86465402-86465811 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 256, 243 |
| Conread position: | 461-773 |
| Cow position: | chr2:5874876-5874564 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 179, 175 |
| Conread position: | 471-754 |
| Cow position: | chr2:86465918-86466202 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 175, 171 |
| Conread position: | 471-780 |
| Cow position: | chr2:78754812-78755121 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-812 |
| Cow position: | chr2:5875034-5874693 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 137, 159 |
| Conread position: | 478-780 |
| Cow position: | chr2:86465001-86465303 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 495-814 |
| Cow position: | chr2:78754101-78754417 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 211, 66 |
Show alignments to all cow chromosomes.