Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 308-652 |
| Cow position: | chr21:12608279-12607929 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 308-814 |
| Cow position: | chr21:12659315-12659827 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 309-750 |
| Cow position: | chr21:12659568-12660015 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 309-780 |
| Cow position: | chr21:12608698-12608221 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 415 |
| Conread position: | 315-836 |
| Cow position: | chr21:12608776-12608248 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 350-776 |
| Cow position: | chr21:12658778-12659201 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 357-817 |
| Cow position: | chr21:34223024-34222557 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 379-748 |
| Cow position: | chr21:34222912-34222543 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 261 |
| Conread position: | 379-783 |
| Cow position: | chr21:12608538-12608134 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 379-812 |
| Cow position: | chr21:12659560-12659993 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 344, 340 |
| Conread position: | 379-848 |
| Cow position: | chr21:12658888-12659358 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 0 |
| Conread position: | 381-837 |
| Cow position: | chr21:12608788-12608330 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 0 |
| Conread position: | 387-838 |
| Cow position: | chr21:12658980-12659433 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 241, 229 |
| Conread position: | 403-812 |
| Cow position: | chr21:12659248-12659657 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-793 |
| Cow position: | chr21:12659184-12659554 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 300, 294 |
| Conread position: | 423-808 |
| Cow position: | chr21:12659100-12659485 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 300, 296 |
| Conread position: | 423-814 |
| Cow position: | chr21:12608410-12608019 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 300, 296 |
| Conread position: | 423-883 |
| Cow position: | chr21:12608830-12608367 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 296 |
| Conread position: | 429-814 |
| Cow position: | chr21:12608908-12608523 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-835 |
| Cow position: | chr21:34223030-34222622 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 429-848 |
| Cow position: | chr21:12659526-12659946 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 84 |
| Conread position: | 432-705 |
| Cow position: | chr21:12608233-12607960 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-776 |
| Cow position: | chr21:34223101-34222767 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 215, 15 |
| Conread position: | 444-813 |
| Cow position: | chr21:12608305-12607936 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 227, 232 |
| Conread position: | 471-814 |
| Cow position: | chr21:34223153-34222813 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 489-790 |
| Cow position: | chr21:12658830-12659131 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 234, 230 |
Show alignments to all cow chromosomes.