Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 293-871 |
| Cow position: | chr23:24560926-24560339 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 308-748 |
| Cow position: | chr23:24560575-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 309-684 |
| Cow position: | chr23:24639700-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 68, 248 |
| Conread position: | 309-751 |
| Cow position: | chr23:24639616-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 357-813 |
| Cow position: | chr23:25626562-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 379-652 |
| Cow position: | chr23:25723987-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-737 |
| Cow position: | chr23:24547022-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-755 |
| Cow position: | chr23:25698598-25698224 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 144, 157 |
| Conread position: | 383-814 |
| Cow position: | chr23:24536068-24535638 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 34 |
| Conread position: | 385-814 |
| Cow position: | chr23:25626512-25626938 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 386-706 |
| Cow position: | chr23:24560407-24560088 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 294, 268 |
| Conread position: | 387-784 |
| Cow position: | chr23:24522588-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 387-813 |
| Cow position: | chr23:24547098-24546672 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 387-835 |
| Cow position: | chr23:24547266-24546816 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 387-864 |
| Cow position: | chr23:25626262-25626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 325 |
| Conread position: | 390-814 |
| Cow position: | chr23:25724144-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-838 |
| Cow position: | chr23:24535970-24535528 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 0 |
| Conread position: | 399-810 |
| Cow position: | chr23:25660143-25660554 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 238 |
| Conread position: | 399-833 |
| Cow position: | chr23:24639542-24639980 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 400-767 |
| Cow position: | chr23:24626383-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 349 |
| Conread position: | 402-835 |
| Cow position: | chr23:25626025-25626460 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 234, 213 |
| Conread position: | 403-703 |
| Cow position: | chr23:24522490-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 149 |
| Conread position: | 403-784 |
| Cow position: | chr23:25626194-25626575 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 233, 214 |
| Conread position: | 403-812 |
| Cow position: | chr23:24639632-24640041 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 404-701 |
| Cow position: | chr23:24654028-24654327 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 404-873 |
| Cow position: | chr23:25698658-25698187 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 405-736 |
| Cow position: | chr23:25660402-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 405-753 |
| Cow position: | chr23:25724045-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 319, 312 |
| Conread position: | 405-814 |
| Cow position: | chr23:24560556-24560147 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-874 |
| Cow position: | chr23:25660233-25660705 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 148 |
| Conread position: | 409-814 |
| Cow position: | chr23:25698486-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 411-780 |
| Cow position: | chr23:25625950-25626319 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-833 |
| Cow position: | chr23:24522729-24522308 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 157, 121 |
| Conread position: | 418-780 |
| Cow position: | chr23:25626125-25626487 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-653 |
| Cow position: | chr23:24654131-24654363 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-704 |
| Cow position: | chr23:24535695-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 246, 256 |
| Conread position: | 421-748 |
| Cow position: | chr23:25626713-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 234, 244 |
| Conread position: | 421-814 |
| Cow position: | chr23:24639482-24639875 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 422-814 |
| Cow position: | chr23:24547315-24546923 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-870 |
| Cow position: | chr23:24560622-24560172 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 0 |
| Conread position: | 428-653 |
| Cow position: | chr23:25660508-25660733 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-814 |
| Cow position: | chr23:24535856-24535470 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-814 |
| Cow position: | chr23:24626329-24626715 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 379 |
| Conread position: | 428-814 |
| Cow position: | chr23:24639405-24639791 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-841 |
| Cow position: | chr23:24547141-24546727 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 398 |
| Conread position: | 428-873 |
| Cow position: | chr23:24639237-24639685 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 152 |
| Conread position: | 428-873 |
| Cow position: | chr23:24639321-24639769 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 429-737 |
| Cow position: | chr23:25698382-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-783 |
| Cow position: | chr23:24535771-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 325, 0 |
| Conread position: | 429-833 |
| Cow position: | chr23:24560700-24560293 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 444-835 |
| Cow position: | chr23:24626189-24626570 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 115, 51 |
| Conread position: | 453-873 |
| Cow position: | chr23:24626270-24626693 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 471-780 |
| Cow position: | chr23:25698676-25698367 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 474-814 |
| Cow position: | chr23:24639199-24639539 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 181, 200 |
| Conread position: | 486-781 |
| Cow position: | chr23:24521983-24521688 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 212, 257 |
| Conread position: | 489-881 |
| Cow position: | chr23:25660149-25660546 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 0 |
| Conread position: | 490-835 |
| Cow position: | chr23:24522569-24522222 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 491-814 |
| Cow position: | chr23:24547330-24547007 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 127 |
| Conread position: | 500-814 |
| Cow position: | chr23:24654042-24654356 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-835 |
| Cow position: | chr23:25698676-25698394 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 571-814 |
| Cow position: | chr23:24547334-24547091 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 177, 189 |
Show alignments to all cow chromosomes.