Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 309-775 |
| Cow position: | chr28:7757647-7758119 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 309-814 |
| Cow position: | chr28:7757815-7758326 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 312-784 |
| Cow position: | chr28:34695726-34696204 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 382-813 |
| Cow position: | chr28:9289972-9290404 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 174 |
| Conread position: | 382-873 |
| Cow position: | chr28:34696054-34696548 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 251 |
| Conread position: | 383-739 |
| Cow position: | chr28:34696223-34696579 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 383-814 |
| Cow position: | chr28:9253162-9253593 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-784 |
| Cow position: | chr28:7757232-7757624 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 387-593 |
| Cow position: | chr28:7810738-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-601 |
| Cow position: | chr28:9290481-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 158, 167 |
| Conread position: | 387-652 |
| Cow position: | chr28:7758067-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 387-663 |
| Cow position: | chr28:9299284-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-751 |
| Cow position: | chr28:7810570-7810934 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 247, 229 |
| Conread position: | 387-755 |
| Cow position: | chr28:9253250-9253620 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 387-775 |
| Cow position: | chr28:7757815-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-775 |
| Cow position: | chr28:7810327-7810706 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 319, 209 |
| Conread position: | 387-813 |
| Cow position: | chr28:7757479-7757905 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-813 |
| Cow position: | chr28:7757563-7757989 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-814 |
| Cow position: | chr28:9253082-9253509 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-814 |
| Cow position: | chr28:11333822-11333401 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 336, 332 |
| Conread position: | 387-871 |
| Cow position: | chr28:9290151-9290632 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 391-836 |
| Cow position: | chr28:7757399-7757846 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 0 |
| Conread position: | 397-679 |
| Cow position: | chr28:7810664-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 229, 219 |
| Conread position: | 398-691 |
| Cow position: | chr28:9298889-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 400-873 |
| Cow position: | chr28:34695902-34696380 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 403-738 |
| Cow position: | chr28:7757999-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-814 |
| Cow position: | chr28:9298729-9299137 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 405-697 |
| Cow position: | chr28:9299218-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 225, 211 |
| Conread position: | 405-751 |
| Cow position: | chr28:33210309-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 405-814 |
| Cow position: | chr28:7757665-7758074 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-691 |
| Cow position: | chr28:7758489-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 409-835 |
| Cow position: | chr28:11334052-11333624 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 418-793 |
| Cow position: | chr28:34696174-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 128, 134 |
| Conread position: | 418-814 |
| Cow position: | chr28:11334211-11333815 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 420-784 |
| Cow position: | chr28:34673367-34673731 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 123 |
| Conread position: | 421-799 |
| Cow position: | chr28:33210241-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 423-873 |
| Cow position: | chr28:34696011-34696464 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 428-668 |
| Cow position: | chr28:33210416-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 428-677 |
| Cow position: | chr28:7810284-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 198, 189 |
| Conread position: | 428-775 |
| Cow position: | chr28:9298671-9299015 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 428-784 |
| Cow position: | chr28:9290272-9290626 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 103 |
| Conread position: | 428-785 |
| Cow position: | chr28:34679540-34679180 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 428-812 |
| Cow position: | chr28:11333865-11333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 202, 192 |
| Conread position: | 428-814 |
| Cow position: | chr28:7810527-7810913 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-814 |
| Cow position: | chr28:9252955-9253341 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-818 |
| Cow position: | chr28:7757190-7757574 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 194, 115 |
| Conread position: | 428-901 |
| Cow position: | chr28:9253039-9253513 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 197 |
| Conread position: | 429-775 |
| Cow position: | chr28:7758429-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-776 |
| Cow position: | chr28:34673463-34673807 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 218, 210 |
| Conread position: | 471-780 |
| Cow position: | chr28:7758387-7758696 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 471-814 |
| Cow position: | chr28:9252913-9253257 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 323 |
| Conread position: | 474-811 |
| Cow position: | chr28:34695726-34696063 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 474-814 |
| Cow position: | chr28:7757398-7757738 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 243, 250 |
| Conread position: | 489-824 |
| Cow position: | chr28:9299218-9299555 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 327, 0 |
| Conread position: | 491-818 |
| Cow position: | chr28:7758323-7758650 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 492-838 |
| Cow position: | chr28:33210228-33210577 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 179, 184 |
| Conread position: | 512-751 |
| Cow position: | chr28:7810284-7810523 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.