Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 383-800 |
| Cow position: | chr3:20194781-20195198 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 387-644 |
| Cow position: | chr3:62721842-62721585 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 249, 230 |
| Conread position: | 387-697 |
| Cow position: | chr3:68027071-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-814 |
| Cow position: | chr3:68045832-68046259 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-834 |
| Cow position: | chr3:62722178-62721729 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 231 |
| Conread position: | 387-835 |
| Cow position: | chr3:62742425-62742870 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 425, 213 |
| Conread position: | 402-665 |
| Cow position: | chr3:62743171-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 405-616 |
| Cow position: | chr3:68046102-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-622 |
| Cow position: | chr3:68027510-68027726 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 405-824 |
| Cow position: | chr3:68027173-68027594 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 405-835 |
| Cow position: | chr3:68027257-68027689 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 407-870 |
| Cow position: | chr3:62722073-62721608 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 11 |
| Conread position: | 409-752 |
| Cow position: | chr3:62742696-62743033 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 186, 61 |
| Conread position: | 411-812 |
| Cow position: | chr3:62721986-62721585 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 418-698 |
| Cow position: | chr3:20194984-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-738 |
| Cow position: | chr3:62721893-62721575 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-778 |
| Cow position: | chr3:68027020-68027378 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 198 |
| Conread position: | 420-824 |
| Cow position: | chr3:68045781-68046187 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 420-834 |
| Cow position: | chr3:62722229-62721814 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 0 |
| Conread position: | 420-835 |
| Cow position: | chr3:68045613-68046030 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 421-701 |
| Cow position: | chr3:62742292-62742571 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 421-780 |
| Cow position: | chr3:62742375-62742731 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 213, 196 |
| Conread position: | 421-784 |
| Cow position: | chr3:62722312-62721949 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-794 |
| Cow position: | chr3:68045952-68046323 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 282, 311 |
| Conread position: | 428-699 |
| Cow position: | chr3:62743033-62743299 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 428-700 |
| Cow position: | chr3:68027448-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 126, 112 |
| Conread position: | 428-753 |
| Cow position: | chr3:68046041-68046364 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 191, 202 |
| Conread position: | 429-784 |
| Cow position: | chr3:20194743-20195098 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 211, 205 |
| Conread position: | 429-813 |
| Cow position: | chr3:20194911-20195295 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 202, 198 |
| Conread position: | 429-870 |
| Cow position: | chr3:68045706-68046150 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 406 |
| Conread position: | 430-812 |
| Cow position: | chr3:62722387-62722005 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 430-814 |
| Cow position: | chr3:77351134-77350758 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 434-749 |
| Cow position: | chr3:62743118-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-870 |
| Cow position: | chr3:68045561-68045982 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 466-778 |
| Cow position: | chr3:68026983-68027294 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 520-828 |
| Cow position: | chr3:62722381-62722070 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 555-865 |
| Cow position: | chr3:20194785-20195098 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 168, 162 |
Show alignments to all cow chromosomes.