Cow genome map

Conread name: Ss1.1-Pig3-SRG8004D12.3

Conread position: 306-813
Cow position: chr7:18390222-18390735 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 56

Conread position: 357-756
Cow position: chr7:28846450-28846855 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 248
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 45, 20

Conread position: 379-814
Cow position: chr7:1014743-1015177 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 279
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 165, 9

Conread position: 381-751
Cow position: chr7:8277991-8278359 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 228
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 14

Conread position: 384-775
Cow position: chr7:8277656-8278047 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 246
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 71

Conread position: 384-778
Cow position: chr7:8325381-8325775 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 238
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 75

Conread position: 386-616
Cow position: chr7:11434509-11434279 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-775
Cow position: chr7:11600873-11600484 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 387-613
Cow position: chr7:1440037-1440263 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 172, 156

Conread position: 387-620
Cow position: chr7:8325888-8326121 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 169, 149

Conread position: 387-653
Cow position: chr7:11600704-11600438 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 170
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 387-708
Cow position: chr7:18390477-18390798 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 387-709
Cow position: chr7:1015170-1015494 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 29, 37

Conread position: 387-740
Cow position: chr7:42878625-42878272 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 234
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 284, 288

Conread position: 387-775
Cow position: chr7:1438312-1438700 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 231
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 324, 337

Conread position: 387-778
Cow position: chr7:42878877-42878486 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 387-780
Cow position: chr7:8325636-8326029 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 250
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 148, 161

Conread position: 387-814
Cow position: chr7:42878961-42878534 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 387-814
Cow position: chr7:42879045-42878618 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 32

Conread position: 387-828
Cow position: chr7:3180348-3180792 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 168

Conread position: 387-836
Cow position: chr7:1439787-1440235 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 277
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 247, 72

Conread position: 387-836
Cow position: chr7:42879129-42878679 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 442

Conread position: 387-871
Cow position: chr7:42878793-42878306 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 0

Conread position: 387-901
Cow position: chr7:3180264-3180779 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 169

Conread position: 391-691
Cow position: chr7:1439453-1439756 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 224, 133

Conread position: 391-787
Cow position: chr7:8325136-8325532 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 259
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 168, 143

Conread position: 398-778
Cow position: chr7:8325309-8325691 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 239
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 244

Conread position: 400-873
Cow position: chr7:18390236-18390714 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 403-780
Cow position: chr7:1439886-1440262 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 228, 89

Conread position: 403-823
Cow position: chr7:18390409-18390831 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 275
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 16, 8

Conread position: 404-753
Cow position: chr7:1439632-1439983 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 223
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 135

Conread position: 405-701
Cow position: chr7:8243803-8244096 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 193
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 138, 151

Conread position: 405-784
Cow position: chr7:11601022-11600643 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 247
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 405-814
Cow position: chr7:42878691-42878282 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 405-871
Cow position: chr7:42879195-42878727 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 465

Conread position: 406-787
Cow position: chr7:8324730-8325112 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 245
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 11, 52

Conread position: 406-836
Cow position: chr7:1014852-1015285 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 409-698
Cow position: chr7:3180538-3180825 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 229, 208

Conread position: 409-778
Cow position: chr7:8324816-8325187 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 240
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 10, 49

Conread position: 409-784
Cow position: chr7:8243052-8243426 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 243
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 124, 139

Conread position: 409-824
Cow position: chr7:8325574-8325991 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 258
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 61, 43

Conread position: 409-836
Cow position: chr7:3180118-3180546 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 416

Conread position: 409-839
Cow position: chr7:12293517-12293948 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 254
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 403, 416

Conread position: 409-881
Cow position: chr7:3179866-3180341 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 0

Conread position: 410-824
Cow position: chr7:1014525-1014937 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 270
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 101

Conread position: 419-801
Cow position: chr7:8278195-8278574 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 239
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 38

Conread position: 420-787
Cow position: chr7:8243650-8244015 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 226
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 31

Conread position: 420-828
Cow position: chr7:42879432-42879021 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 252
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 51

Conread position: 420-836
Cow position: chr7:11601175-11600758 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 263
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 216, 197

Conread position: 420-870
Cow position: chr7:18390006-18390459 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 289
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 77, 98

Conread position: 421-784
Cow position: chr7:8277861-8278224 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 240
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 43, 31

Conread position: 421-835
Cow position: chr7:3179962-3180378 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 51

Conread position: 421-837
Cow position: chr7:1015036-1015454 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 0

Conread position: 421-887
Cow position: chr7:1014370-1014833 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 288
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 280, 292

Conread position: 423-877
Cow position: chr7:12293279-12293736 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 272
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 208, 204

Conread position: 428-824
Cow position: chr7:3180053-3180451 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 0

Conread position: 428-824
Cow position: chr7:3180221-3180619 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 0

Conread position: 428-835
Cow position: chr7:1014959-1015368 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 429-623
Cow position: chr7:8277281-8277475 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 28

Conread position: 429-788
Cow position: chr7:8325762-8326121 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 245
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 32

Conread position: 429-825
Cow position: chr7:3180474-3180871 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 53

Conread position: 429-833
Cow position: chr7:1014708-1015115 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 0

Conread position: 430-745
Cow position: chr7:8278122-8278436 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 201
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 119, 126

Conread position: 430-779
Cow position: chr7:8277954-8278303 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 27

Conread position: 430-780
Cow position: chr7:8243408-8243758 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 218
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 19

Conread position: 431-697
Cow position: chr7:1014296-1014562 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 431-710
Cow position: chr7:28846698-28846977 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 173
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 431-835
Cow position: chr7:42879253-42878847 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 0

Conread position: 432-824
Cow position: chr7:3179721-3180115 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 0

Conread position: 432-835
Cow position: chr7:11601079-11600674 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 0

Conread position: 438-775
Cow position: chr7:1438279-1438616 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 205
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 460-778
Cow position: chr7:11600883-11600565 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 246, 242

Conread position: 463-814
Cow position: chr7:18390133-18390484 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 463-836
Cow position: chr7:42879305-42878931 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 241
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 353, 363

Conread position: 467-703
Cow position: chr7:11434512-11434276 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 159
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 89

Conread position: 474-775
Cow position: chr7:1439452-1439756 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 240, 135

Conread position: 474-878
Cow position: chr7:1014669-1015076 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 70, 80

Conread position: 476-822
Cow position: chr7:1014257-1014605 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 217
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 336, 0

Conread position: 501-835
Cow position: chr7:3179706-3180042 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 312, 0

Conread position: 520-833
Cow position: chr7:3179638-3179957 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 555-784
Cow position: chr7:11434508-11434279 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 72, 85

Conread position: 557-775
Cow position: chr7:1439451-1439667 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 136, 0

Show alignments to all cow chromosomes.