Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8004D12.3 |
| Conread position: | 309-784 |
| Cow position: | chrX:25310037-25310518 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 311 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 60, 245 |
| Conread position: | 379-772 |
| Cow position: | chrX:25325784-25325391 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 165, 179 |
| Conread position: | 379-828 |
| Cow position: | chrX:25325532-25325080 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 0 |
| Conread position: | 384-835 |
| Cow position: | chrX:25325191-25324738 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 234 |
| Conread position: | 386-813 |
| Cow position: | chrX:29045114-29044687 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-591 |
| Cow position: | chrX:29044861-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-592 |
| Cow position: | chrX:25310373-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-613 |
| Cow position: | chrX:29045680-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-669 |
| Cow position: | chrX:29044945-29044663 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-748 |
| Cow position: | chrX:25324600-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-748 |
| Cow position: | chrX:29045029-29044668 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-775 |
| Cow position: | chrX:25309701-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-775 |
| Cow position: | chrX:25309869-25310257 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 243 |
| Conread position: | 387-780 |
| Cow position: | chrX:25310037-25310430 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 151 |
| Conread position: | 387-780 |
| Cow position: | chrX:25325440-25325047 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 146 |
| Conread position: | 387-811 |
| Cow position: | chrX:25325017-25324596 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 31 |
| Conread position: | 387-813 |
| Cow position: | chrX:25325272-25324846 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 387-828 |
| Cow position: | chrX:29045281-29044837 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 228 |
| Conread position: | 387-830 |
| Cow position: | chrX:25324852-25324406 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 0 |
| Conread position: | 387-835 |
| Cow position: | chrX:25325356-25324906 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 406 |
| Conread position: | 387-836 |
| Cow position: | chrX:25309953-25310403 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 163 |
| Conread position: | 391-664 |
| Cow position: | chrX:25310293-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 227, 239 |
| Conread position: | 400-812 |
| Cow position: | chrX:14181316-14180902 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 347 |
| Conread position: | 403-769 |
| Cow position: | chrX:25310221-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 403-775 |
| Cow position: | chrX:25309801-25310173 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-783 |
| Cow position: | chrX:25324752-25324372 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 328 |
| Conread position: | 403-783 |
| Cow position: | chrX:25325088-25324708 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-697 |
| Cow position: | chrX:29045746-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 229, 212 |
| Conread position: | 409-784 |
| Cow position: | chrX:29045177-29044800 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 211 |
| Conread position: | 409-813 |
| Cow position: | chrX:25324662-25324258 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 351 |
| Conread position: | 409-871 |
| Cow position: | chrX:25325672-25325205 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 352 |
| Conread position: | 420-833 |
| Cow position: | chrX:29045332-29044916 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 428-778 |
| Cow position: | chrX:29045807-29045457 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 39, 50 |
| Conread position: | 428-795 |
| Cow position: | chrX:13826760-13826393 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 99, 121 |
| Conread position: | 428-836 |
| Cow position: | chrX:13826676-13826267 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 429-873 |
| Cow position: | chrX:14181621-14181174 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 293, 273 |
| Conread position: | 432-778 |
| Cow position: | chrX:13826588-13826242 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-793 |
| Cow position: | chrX:13826924-13826563 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 94, 117 |
| Conread position: | 438-740 |
| Cow position: | chrX:13826498-13826196 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-799 |
| Cow position: | chrX:14181420-14181083 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 92, 70 |
| Conread position: | 470-828 |
| Cow position: | chrX:25325777-25325416 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 471-780 |
| Cow position: | chrX:25309701-25310010 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-799 |
| Cow position: | chrX:13826801-13826473 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 160, 155 |
| Conread position: | 471-814 |
| Cow position: | chrX:14181327-14180984 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 334, 326 |
| Conread position: | 482-812 |
| Cow position: | chrX:29045837-29045507 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 495-791 |
| Cow position: | chrX:14181639-14181344 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 495-835 |
| Cow position: | chrX:25325837-25325494 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 47 |
| Conread position: | 521-834 |
| Cow position: | chrX:25309667-25309981 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 302, 0 |
Show alignments to all cow chromosomes.