Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-100 |
| Cow position: | chr1:83642866-83642965 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr1:67603704-67603970 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 1-274 |
| Cow position: | chr1:78562283-78561990 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 231 |
| Conread position: | 1-283 |
| Cow position: | chr1:35000115-35000394 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 1-308 |
| Cow position: | chr1:58146126-58146451 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 91, 228 |
| Conread position: | 1-310 |
| Cow position: | chr1:20203289-20203603 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 110, 214 |
| Conread position: | 1-312 |
| Cow position: | chr1:29888556-29888878 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 1-314 |
| Cow position: | chr1:61607672-61607338 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 89, 231 |
| Conread position: | 1-359 |
| Cow position: | chr1:14026220-14025844 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 97, 224 |
| Conread position: | 1-359 |
| Cow position: | chr1:80172754-80172376 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 221 |
| Conread position: | 1-359 |
| Cow position: | chr1:95305106-95305479 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 130 |
| Conread position: | 1-360 |
| Cow position: | chr1:7452808-7452442 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 183 |
| Conread position: | 1-371 |
| Cow position: | chr1:87115226-87114836 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 238 |
| Conread position: | 2-308 |
| Cow position: | chr1:33391237-33390910 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 88, 229 |
| Conread position: | 2-359 |
| Cow position: | chr1:2758697-2758326 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 88, 225 |
| Conread position: | 2-367 |
| Cow position: | chr1:101623373-101622992 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 3-317 |
| Cow position: | chr1:58142816-58143149 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 95, 225 |
| Conread position: | 13-264 |
| Cow position: | chr1:97472777-97473045 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 216 |
| Conread position: | 94-308 |
| Cow position: | chr1:25518240-25518025 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 94-308 |
| Cow position: | chr1:72172668-72172453 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 94-311 |
| Cow position: | chr1:30069495-30069270 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 94-315 |
| Cow position: | chr1:98426105-98425885 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 207, 59 |
| Conread position: | 94-330 |
| Cow position: | chr1:83643032-83643271 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 124, 115 |
| Conread position: | 94-345 |
| Cow position: | chr1:36074995-36075252 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 203 |
| Conread position: | 94-363 |
| Cow position: | chr1:49051450-49051728 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 94-370 |
| Cow position: | chr1:71242291-71242565 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 46, 118 |
| Conread position: | 95-363 |
| Cow position: | chr1:3327579-3327858 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 96-308 |
| Cow position: | chr1:90971058-90970845 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 96-308 |
| Cow position: | chr1:94534710-94534923 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 100-372 |
| Cow position: | chr1:13695357-13695080 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 101-360 |
| Cow position: | chr1:35429847-35429592 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 108-349 |
| Cow position: | chr1:3330798-3330546 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 114-359 |
| Cow position: | chr1:90041686-90041933 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 74, 98 |
| Conread position: | 131-370 |
| Cow position: | chr1:102411131-102410892 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 56 |
| Conread position: | 148-349 |
| Cow position: | chr1:68929344-68929139 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 166-359 |
| Cow position: | chr1:1923803-1924001 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 183-370 |
| Cow position: | chr1:26910987-26910798 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 397-582 |
| Cow position: | chr1:24174948-24174768 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 40 |
Show alignments to all cow chromosomes.