Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-233 |
| Cow position: | chr10:22576881-22577131 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-310 |
| Cow position: | chr10:412540-412222 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 1-312 |
| Cow position: | chr10:12215724-12215404 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 149 |
| Conread position: | 1-349 |
| Cow position: | chr10:69887415-69887780 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 1-359 |
| Cow position: | chr10:55965036-55964661 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 146 |
| Conread position: | 1-362 |
| Cow position: | chr10:31165640-31165262 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 194 |
| Conread position: | 1-367 |
| Cow position: | chr10:4399599-4399976 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 2-98 |
| Cow position: | chr10:59342771-59342675 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-370 |
| Cow position: | chr10:33136177-33135787 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 96, 226 |
| Conread position: | 10-370 |
| Cow position: | chr10:25934306-25933974 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 16-352 |
| Cow position: | chr10:4676450-4676086 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 178 |
| Conread position: | 87-312 |
| Cow position: | chr10:40598906-40598676 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 127 |
| Conread position: | 91-370 |
| Cow position: | chr10:16753320-16753610 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 94-263 |
| Cow position: | chr10:61649865-61649695 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 94-271 |
| Cow position: | chr10:21043450-21043621 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 94-308 |
| Cow position: | chr10:33815931-33816146 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 94-328 |
| Cow position: | chr10:53797763-53798004 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 94-357 |
| Cow position: | chr10:14424121-14423865 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 207, 22 |
| Conread position: | 94-359 |
| Cow position: | chr10:10076113-10076377 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 94-359 |
| Cow position: | chr10:67295626-67295904 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 94-361 |
| Cow position: | chr10:68256369-68256097 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 29 |
| Conread position: | 94-363 |
| Cow position: | chr10:24720292-24720009 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 185 |
| Conread position: | 96-263 |
| Cow position: | chr10:32884043-32884212 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 96-359 |
| Cow position: | chr10:1339201-1338932 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 98-357 |
| Cow position: | chr10:36818070-36817806 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 111 |
| Conread position: | 98-362 |
| Cow position: | chr10:30084796-30084522 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 100-358 |
| Cow position: | chr10:22588129-22587871 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 104-315 |
| Cow position: | chr10:32096837-32096625 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 135-370 |
| Cow position: | chr10:25925170-25925408 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 118, 37 |
| Conread position: | 140-370 |
| Cow position: | chr10:32307083-32306857 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 5, 61 |
| Conread position: | 148-277 |
| Cow position: | chr10:50347362-50347490 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 153-363 |
| Cow position: | chr10:38792187-38791977 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 157-343 |
| Cow position: | chr10:51684745-51684555 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 165-359 |
| Cow position: | chr10:13337490-13337686 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 179-359 |
| Cow position: | chr10:47482066-47481886 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 120, 31 |
| Conread position: | 185-359 |
| Cow position: | chr10:59341670-59341491 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 25 |
Show alignments to all cow chromosomes.