Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-250 |
| Cow position: | chr16:48797270-48797534 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 225 |
| Conread position: | 1-256 |
| Cow position: | chr16:27234705-27234447 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 1-256 |
| Cow position: | chr16:53941233-53940965 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-310 |
| Cow position: | chr16:38447880-38447558 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 1-346 |
| Cow position: | chr16:32072248-32072617 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 173 |
| Conread position: | 1-359 |
| Cow position: | chr16:23886553-23886197 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 92, 136 |
| Conread position: | 1-362 |
| Cow position: | chr16:33902230-33901857 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 1-363 |
| Cow position: | chr16:52270450-52270071 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 266 |
| Conread position: | 7-299 |
| Cow position: | chr16:38592417-38592725 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 221 |
| Conread position: | 62-360 |
| Cow position: | chr16:56200874-56201183 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 32, 164 |
| Conread position: | 94-265 |
| Cow position: | chr16:53382517-53382693 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 133 |
| Conread position: | 94-278 |
| Cow position: | chr16:31147061-31146873 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 94-299 |
| Cow position: | chr16:44249926-44249720 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 135 |
| Conread position: | 94-308 |
| Cow position: | chr16:48798655-48798443 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 94-312 |
| Cow position: | chr16:16579731-16579509 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 94-312 |
| Cow position: | chr16:19936999-19936779 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 94-315 |
| Cow position: | chr16:16630825-16631044 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 94-340 |
| Cow position: | chr16:38443898-38443644 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 94-362 |
| Cow position: | chr16:12490332-12490604 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 180, 126 |
| Conread position: | 96-360 |
| Cow position: | chr16:7180305-7180559 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 96-363 |
| Cow position: | chr16:52631234-52631497 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 206, 114 |
| Conread position: | 98-277 |
| Cow position: | chr16:22717693-22717876 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 100-370 |
| Cow position: | chr16:49822857-49823130 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 113 |
| Conread position: | 108-362 |
| Cow position: | chr16:37069820-37069559 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 5, 104 |
| Conread position: | 112-309 |
| Cow position: | chr16:31143453-31143651 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 128-269 |
| Cow position: | chr16:29619138-29619276 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 144-363 |
| Cow position: | chr16:54397370-54397148 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 155, 65 |
| Conread position: | 166-370 |
| Cow position: | chr16:22836444-22836242 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 145, 54 |
| Conread position: | 194-367 |
| Cow position: | chr16:37013866-37014036 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 195-359 |
| Cow position: | chr16:41376075-41375908 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 15 |
Show alignments to all cow chromosomes.