Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-265 |
| Cow position: | chr21:14141888-14141608 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 1-269 |
| Cow position: | chr21:3383946-3383661 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 1-270 |
| Cow position: | chr21:11253408-11253123 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 84, 179 |
| Conread position: | 1-271 |
| Cow position: | chr21:15706654-15706940 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 226 |
| Conread position: | 1-312 |
| Cow position: | chr21:8404647-8404319 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 226 |
| Conread position: | 1-312 |
| Cow position: | chr21:44545711-44545394 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 154 |
| Conread position: | 1-358 |
| Cow position: | chr21:22397451-22397817 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 80 |
| Conread position: | 6-345 |
| Cow position: | chr21:22199098-22198743 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 83, 143 |
| Conread position: | 8-312 |
| Cow position: | chr21:27664949-27664625 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 219 |
| Conread position: | 21-359 |
| Cow position: | chr21:13830259-13829905 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 202 |
| Conread position: | 92-380 |
| Cow position: | chr21:11121768-11122054 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 119 |
| Conread position: | 94-269 |
| Cow position: | chr21:32402569-32402742 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 94-276 |
| Cow position: | chr21:44726157-44725975 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 94-298 |
| Cow position: | chr21:18993751-18993549 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 94-349 |
| Cow position: | chr21:48306459-48306716 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 119 |
| Conread position: | 94-359 |
| Cow position: | chr21:13534517-13534249 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 208, 77 |
| Conread position: | 94-360 |
| Cow position: | chr21:48362489-48362756 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 94-362 |
| Cow position: | chr21:34729508-34729775 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 72, 117 |
| Conread position: | 94-371 |
| Cow position: | chr21:8855793-8856078 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 207, 37 |
| Conread position: | 96-250 |
| Cow position: | chr21:6195464-6195611 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 96-363 |
| Cow position: | chr21:41537380-41537117 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 214, 57 |
| Conread position: | 97-359 |
| Cow position: | chr21:48469993-48469740 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 97-370 |
| Cow position: | chr21:15245170-15245439 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 98-250 |
| Cow position: | chr21:48363891-48364044 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 125-358 |
| Cow position: | chr21:32431700-32431936 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 186, 96 |
| Conread position: | 128-362 |
| Cow position: | chr21:10736105-10735872 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 161, 72 |
| Conread position: | 145-359 |
| Cow position: | chr21:29198291-29198510 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 153-342 |
| Cow position: | chr21:36868965-36868772 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 154-359 |
| Cow position: | chr21:3392100-3391897 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 179-359 |
| Cow position: | chr21:44561097-44561276 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 31 |
| Conread position: | 210-367 |
| Cow position: | chr21:369363-369207 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 92, 47 |
Show alignments to all cow chromosomes.