Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-95 |
| Cow position: | chr29:12446067-12445973 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 79 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-359 |
| Cow position: | chr29:19651780-19651406 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 166 |
| Conread position: | 1-359 |
| Cow position: | chr29:31843258-31843635 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 151 |
| Conread position: | 1-370 |
| Cow position: | chr29:10289324-10289701 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 17-312 |
| Cow position: | chr29:8790245-8790550 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 181 |
| Conread position: | 61-370 |
| Cow position: | chr29:19662787-19662484 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 93-361 |
| Cow position: | chr29:13501686-13501417 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 181, 69 |
| Conread position: | 94-270 |
| Cow position: | chr29:3104246-3104065 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 94-270 |
| Cow position: | chr29:3143791-3143608 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 94-270 |
| Cow position: | chr29:31663683-31663504 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 94-305 |
| Cow position: | chr29:25914609-25914822 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 94-308 |
| Cow position: | chr29:31650153-31649937 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 179 |
| Conread position: | 94-312 |
| Cow position: | chr29:3550718-3550498 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 94-367 |
| Cow position: | chr29:5224670-5224396 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 94-370 |
| Cow position: | chr29:11282943-11282667 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 97-272 |
| Cow position: | chr29:44695535-44695355 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 98-262 |
| Cow position: | chr29:565448-565604 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 98-333 |
| Cow position: | chr29:33648781-33648540 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 140, 38 |
| Conread position: | 98-357 |
| Cow position: | chr29:22784819-22784553 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 145, 112 |
| Conread position: | 100-362 |
| Cow position: | chr29:30241808-30241543 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 100-363 |
| Cow position: | chr29:10662400-10662132 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 117-362 |
| Cow position: | chr29:30207913-30208158 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 136-363 |
| Cow position: | chr29:4242577-4242350 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 153-277 |
| Cow position: | chr29:28983032-28983156 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 153-362 |
| Cow position: | chr29:37071693-37071482 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 149, 52 |
| Conread position: | 154-358 |
| Cow position: | chr29:349432-349637 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 38 |
| Conread position: | 157-312 |
| Cow position: | chr29:24045181-24045332 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 144, 31 |
| Conread position: | 164-357 |
| Cow position: | chr29:29165330-29165524 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 166-312 |
| Cow position: | chr29:40057567-40057713 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 133, 44 |
| Conread position: | 178-370 |
| Cow position: | chr29:13560662-13560466 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 42 |
| Conread position: | 197-343 |
| Cow position: | chr29:4769561-4769710 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 68 |
Show alignments to all cow chromosomes.