Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-99 |
| Cow position: | chr3:27642099-27642196 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-174 |
| Cow position: | chr3:38305149-38305328 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 1-189 |
| Cow position: | chr3:2657600-2657409 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 1-263 |
| Cow position: | chr3:67459912-67460185 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 220 |
| Conread position: | 1-273 |
| Cow position: | chr3:7851565-7851846 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 1-308 |
| Cow position: | chr3:61213295-61212973 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 80, 224 |
| Conread position: | 1-309 |
| Cow position: | chr3:74798316-74798634 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 188 |
| Conread position: | 1-345 |
| Cow position: | chr3:313352-312991 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 82, 236 |
| Conread position: | 1-357 |
| Cow position: | chr3:5164096-5163736 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 92, 50 |
| Conread position: | 1-359 |
| Cow position: | chr3:7827731-7827356 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 166 |
| Conread position: | 1-359 |
| Cow position: | chr3:21714447-21714067 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-359 |
| Cow position: | chr3:25576796-25576420 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 223 |
| Conread position: | 1-359 |
| Cow position: | chr3:44956492-44956119 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 150 |
| Conread position: | 1-363 |
| Cow position: | chr3:30383651-30383266 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 225 |
| Conread position: | 1-363 |
| Cow position: | chr3:36005330-36005710 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 225 |
| Conread position: | 2-312 |
| Cow position: | chr3:5427618-5427292 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 88, 225 |
| Conread position: | 3-269 |
| Cow position: | chr3:5449084-5449361 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 3-360 |
| Cow position: | chr3:67818237-67817862 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 222 |
| Conread position: | 13-130 |
| Cow position: | chr3:12769690-12769569 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 55-324 |
| Cow position: | chr3:7775726-7775451 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 165 |
| Conread position: | 56-370 |
| Cow position: | chr3:24413645-24413336 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 61-281 |
| Cow position: | chr3:34227882-34228106 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 153 |
| Conread position: | 93-362 |
| Cow position: | chr3:2672571-2672846 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 94-277 |
| Cow position: | chr3:72580834-72580649 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 94-288 |
| Cow position: | chr3:23088133-23088326 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 94-308 |
| Cow position: | chr3:34210925-34211133 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 94-308 |
| Cow position: | chr3:41038380-41038163 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 180 |
| Conread position: | 95-370 |
| Cow position: | chr3:23429993-23430269 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 96-259 |
| Cow position: | chr3:533620-533783 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 96-307 |
| Cow position: | chr3:19200798-19200585 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 96-335 |
| Cow position: | chr3:42315839-42316077 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 204, 113 |
| Conread position: | 96-370 |
| Cow position: | chr3:12769551-12769271 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 189, 124 |
| Conread position: | 98-263 |
| Cow position: | chr3:523910-524075 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 100-363 |
| Cow position: | chr3:52399864-52399615 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 106-347 |
| Cow position: | chr3:61964393-61964159 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 108-370 |
| Cow position: | chr3:27559414-27559147 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 109-263 |
| Cow position: | chr3:59031159-59031006 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 111-358 |
| Cow position: | chr3:23185682-23185932 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 172, 86 |
| Conread position: | 123-264 |
| Cow position: | chr3:75272679-75272820 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 123-359 |
| Cow position: | chr3:7836847-7837084 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 178, 88 |
| Conread position: | 153-349 |
| Cow position: | chr3:7820851-7820651 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 146, 57 |
| Conread position: | 153-362 |
| Cow position: | chr3:3400343-3400558 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 166-363 |
| Cow position: | chr3:5158152-5157948 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 179-312 |
| Cow position: | chr3:18061871-18061739 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 179-366 |
| Cow position: | chr3:2657252-2657062 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 109, 31 |
Show alignments to all cow chromosomes.