Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006M14.5 |
| Conread position: | 1-275 |
| Cow position: | chr5:62033121-62032830 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-277 |
| Cow position: | chr5:34964216-34964508 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 1-311 |
| Cow position: | chr5:47438892-47438567 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 223 |
| Conread position: | 1-348 |
| Cow position: | chr5:16368452-16368091 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 86 |
| Conread position: | 1-359 |
| Cow position: | chr5:44648593-44648215 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 237 |
| Conread position: | 1-366 |
| Cow position: | chr5:44113880-44113509 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 2-370 |
| Cow position: | chr5:11670869-11671246 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 221 |
| Conread position: | 3-312 |
| Cow position: | chr5:45694550-45694866 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 109, 90 |
| Conread position: | 5-360 |
| Cow position: | chr5:47961753-47961379 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 12-312 |
| Cow position: | chr5:52403992-52404308 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 12-368 |
| Cow position: | chr5:15754280-15754652 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 13-100 |
| Cow position: | chr5:34502656-34502743 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-264 |
| Cow position: | chr5:37344232-37343968 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 142 |
| Conread position: | 76-257 |
| Cow position: | chr5:60196619-60196789 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 94-282 |
| Cow position: | chr5:12276401-12276215 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 94-308 |
| Cow position: | chr5:55193811-55194025 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 94-359 |
| Cow position: | chr5:34502803-34503066 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 94-363 |
| Cow position: | chr5:43094674-43094951 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 94-370 |
| Cow position: | chr5:5918837-5918554 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 94-371 |
| Cow position: | chr5:2216766-2217036 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 94-371 |
| Cow position: | chr5:10037884-10038167 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 206, 117 |
| Conread position: | 96-359 |
| Cow position: | chr5:68086833-68087098 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 100-263 |
| Cow position: | chr5:45692639-45692798 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 105-363 |
| Cow position: | chr5:12550308-12550573 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 109-370 |
| Cow position: | chr5:38590601-38590340 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 112-370 |
| Cow position: | chr5:14053116-14053372 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 11, 99 |
| Conread position: | 122-356 |
| Cow position: | chr5:65206492-65206731 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 148, 88 |
| Conread position: | 122-359 |
| Cow position: | chr5:75451037-75451278 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 127-266 |
| Cow position: | chr5:35333414-35333552 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 127-312 |
| Cow position: | chr5:52001704-52001887 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 174, 82 |
| Conread position: | 166-363 |
| Cow position: | chr5:60215990-60216189 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 135, 44 |
| Conread position: | 176-358 |
| Cow position: | chr5:56810914-56810728 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 179-349 |
| Cow position: | chr5:7797106-7796934 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 179-363 |
| Cow position: | chr5:58350254-58350443 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 122, 25 |
Show alignments to all cow chromosomes.